myRT

myRT report for GCA_000187895.1_ASM18789v1

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Seq: DS990132.1 Bacteroides plebeius DSM 17135 Scfld_02_15 genomic scaffold, whole genome shotgun sequence (148376 bp)
Overview 1 RT 1: 60332-69833 bp 2 RT 2: 125348-130063 bp Neighborhood of RT #1 [60332, 69833] RVT-DGRs Neighborhood of RT #2 [125348, 130458] INTN1_C_like RVT-GII Intron_maturas2 KilA-N Feature: gene Location: 60332-60574 bp Feature: gene Location: 60760-61245 bp Feature: gene Location: 61242-62543 bp Ori: EDY94862.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 61452-62130 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 61 452-621 30 bp Feature: gene Location: 62919-63152 bp Feature: gene Location: 63282-69833 bp Feature: gene Location: 125348-126013 bp Feature: gene Location: 125996-126601 bp Ori: EDY94924.1 Feature: domain Description: INTN1_C_like Location: 126119-126584 bp Feature: domain Description: INTN1 _C_like Location: 1 261 1 9-1 26584 bp Feature: gene Location: 127152-128960 bp Ori: EDY94926.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 127416-128238 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 2741 6-1 28238 bp Feature: domain Description: Intron_maturas2 Location: 128364-128619 bp Feature: domain Description: Intron_maturas2 Location: 1 28364-1 2861 9 bp Feature: gene Location: 129152-129688 bp Feature: gene Location: 129655-130458 bp Ori: EDY94928.1 Feature: domain Description: KilA-N Location: 129670-130063 bp Feature: domain Description: KilA-N Location: 1 29670-1 30063 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, INTN1_C_like (cd01185), RVT-GII, Intron_maturas2 (pfam01348), KilA-N (pfam04383)

Seq: DS990134.1 Bacteroides plebeius DSM 17135 Scfld_02_17 genomic scaffold, whole genome shotgun sequence (722256 bp)
Overview 1 RT 1: 335760-340543 bp 2 RT 2: 361202-369605 bp Neighborhood of RT #1 [335760, 340581] Phage_int_SAM_5 INTN1_C_like RVT-GII Intron_maturas2 COG3943 HTH_17 Neighborhood of RT #2 [361202, 370300] KAP_NTPase TraG-D_C RVT_N RVT-GII GIIM YWFCY Relaxase Feature: gene Location: 335760-335894 bp Feature: gene Location: 336097-337263 bp Ori: EDY94086.1 Feature: domain Description: Phage_int_SAM_5 Location: 336421-336727 bp Feature: domain Description: Phage_int_SAM_5 Location: 33642 1-33672 7 bp Feature: domain Description: INTN1_C_like Location: 336781-337246 bp Feature: domain Description: INTN1_C_like Location: 336781-3372 46 bp Feature: gene Location: 337814-339622 bp Ori: EDY94087.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 338078-338900 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 338078-338900 bp Feature: domain Description: Intron_maturas2 Location: 339026-339281 bp Feature: domain Description: Intron_maturas2 Location: 33902 6-3392 81 bp Feature: gene Location: 339836-340198 bp Ori: EDY94088.1 Feature: domain Description: COG3943 Location: 339875-340124 bp Feature: domain Description: COG3943 Location: 339875-34012 4 bp Feature: gene Location: 340276-340581 bp Ori: EDY94089.1 Feature: domain Description: HTH_17 Location: 340414-340543 bp Feature: domain Description: HTH_17 Location: 340414-340543 bp Feature: gene Location: 361202-364456 bp Ori: EDY94104.1 Feature: domain Description: KAP_NTPase Location: 361340-362318 bp Feature: domain Description: KAP_NTPase Location: 361340-362 318 bp Feature: gene Location: 364588-365802 bp Ori: EDY94105.1 Feature: domain Description: TraG-D_C Location: 365170-365500 bp Feature: domain Description: TraG-D_C Location: 365170-365500 bp Feature: gene Location: 365807-367459 bp Ori: EDY94106.1 Feature: domain Description: RVT_N Location: 365861-366104 bp Feature: domain Description: RVT_N Location: 365861-366104 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 366149-366797 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 366149-366797 bp Feature: domain Description: GIIM Note: maturase Location: 366851-367082 bp Feature: domain Description: GIIM Note: maturase Location: 366851-367082 bp Feature: gene Location: 368096-369022 bp Ori: EDY94107.1 Feature: domain Description: YWFCY Location: 368105-368282 bp Feature: domain Description: YWFCY Location: 368105-3682 82 bp Feature: gene Location: 369053-370300 bp Ori: EDY94108.1 Feature: domain Description: Relaxase Location: 369245-369605 bp Feature: domain Description: Relaxase Location: 3692 45-369605 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185), RVT-GII, Intron_maturas2 (pfam01348), COG3943 (Uncharacterized conserved protein ), HTH_17 (pfam12728), KAP_NTPase (pfam07693), TraG-D_C (pfam12696), RVT_N (pfam13655), GIIM (pfam08388)
YWFCY (pfam14293), Relaxase (pfam03432)

Seq: DS990119.1 Bacteroides plebeius DSM 17135 Scfld_02_2 genomic scaffold, whole genome shotgun sequence (571288 bp)
Overview 1 RT 1: 540358-546345 bp 2 RT 2: 567924-570849 bp Neighborhood of RT #1 [540358, 546452] Imm17 TraG-D_C RVT-GII Intron_maturas2 HNHc YWFCY Relaxase Relaxase Neighborhood of RT #2 [567924, 570849] COG3943 RVT-GII Intron_maturas2 Arm-DNA-bind_5 Feature: gene Location: 540358-540639 bp Ori: EDY96783.1 Feature: domain Description: Imm17 Location: 540448-540625 bp Feature: domain Description: Imm17 Location: 540448-540625 bp Feature: gene Location: 540794-541798 bp Ori: EDY96784.1 Feature: domain Description: TraG-D_C Location: 541172-541505 bp Feature: domain Description: TraG-D_C Location: 541172-541505 bp Feature: gene Location: 541762-543579 bp Ori: EDY96785.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 542029-542851 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 542029-542851 bp Feature: domain Description: Intron_maturas2 Location: 543001-543229 bp Feature: domain Description: Intron_maturas2 Location: 543 001-543 229 bp Feature: domain Description: HNHc Note: nucleases Location: 543400-543550 bp Feature: domain Description: HNHc Note: nucleases Location: 543 400-543 550 bp Feature: gene Location: 544106-545269 bp Ori: EDY96786.1 Feature: domain Description: YWFCY Location: 544112-544289 bp Feature: domain Description: YWFCY Location: 544112-544289 bp Feature: gene Location: 545307-546452 bp Ori: EDY96787.1 Feature: domain Description: Relaxase Location: 545493-545808 bp Feature: domain Description: Relaxase Location: 545493 -545808 bp Feature: domain Description: Relaxase Location: 546108-546345 bp Feature: domain Description: Relaxase Location: 546108-5463 45 bp Feature: gene Location: 567924-568289 bp Ori: EDY96821.1 Feature: domain Description: COG3943 Location: 567969-568233 bp Feature: domain Description: COG3 943 Location: 567969-56823 3 bp Feature: gene Location: 568318-568440 bp Feature: gene Location: 568556-569767 bp Ori: EDY96823.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 568610-569045 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 568610-569045 bp Feature: domain Description: Intron_maturas2 Location: 569171-569426 bp Feature: domain Description: Intron_maturas2 Location: 569171-569426 bp Feature: gene Location: 570030-570512 bp Ori: EDY96278.1 Feature: domain Description: Arm-DNA-bind_5 Location: 570060-570315 bp Feature: domain Description: Arm-DNA-bind_5 Location: 570060-5703 15 bp Feature: gene Location: 570715-570849 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Imm17 (pfam15562), TraG-D_C (pfam12696), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), YWFCY (pfam14293), Relaxase (pfam03432), COG3943 (Uncharacterized conserved protein ), Arm-DNA-bind_5 (pfam17293)

Seq: DS990130.1 Bacteroides plebeius DSM 17135 Scfld_02_13 genomic scaffold, whole genome shotgun sequence (760260 bp)
Overview 1 RT 1: 66069-72554 bp 2 RT 2: 528286-531762 bp Neighborhood of RT #1 [66069, 72554] Relaxase Relaxase YWFCY RVT_N RVT-GII GIIM TraG-D_C Neighborhood of RT #2 [528286, 531762] RVT-GII Intron_maturas2 INTN1_C_like Feature: gene Location: 66069-67331 bp Ori: EDY95396.1 Feature: domain Description: Relaxase Location: 66210-66669 bp Feature: domain Description: Relaxase Location: 66210-66669 bp Feature: domain Description: Relaxase Location: 66879-67092 bp Feature: domain Description: Relaxase Location: 66879-67092 bp Feature: gene Location: 67394-68317 bp Ori: EDY95397.1 Feature: domain Description: YWFCY Location: 67400-67577 bp Feature: domain Description: YWFCY Location: 674 00-67577 bp Feature: gene Location: 68954-70606 bp Ori: EDY95398.1 Feature: domain Description: RVT_N Location: 69008-69251 bp Feature: domain Description: RVT_N Location: 69008-69251 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 69296-69944 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 69296-6994 4 bp Feature: domain Description: GIIM Note: maturase Location: 69998-70229 bp Feature: domain Description: GIIM Note: maturase Location: 69998-70229 bp Feature: gene Location: 70611-71846 bp Ori: EDY95399.1 Feature: domain Description: TraG-D_C Location: 71193-71526 bp Feature: domain Description: TraG-D_C Location: 71193-71526 bp Feature: gene Location: 72105-72554 bp Feature: gene Location: 528286-528414 bp Feature: gene Location: 528421-528618 bp Feature: gene Location: 528834-530642 bp Ori: EDY95771.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 529098-529920 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 529098-529920 bp Feature: domain Description: Intron_maturas2 Location: 530046-530301 bp Feature: domain Description: Intron_maturas2 Location: 53004 6-530301 bp Feature: gene Location: 531390-531572 bp Ori: EDY95772.1 Feature: domain Description: INTN1_C_like Location: 531396-531561 bp Feature: domain Description: INTN1_C_like Location: 531396-531561 bp Feature: gene Location: 531556-531762 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Relaxase (pfam03432), YWFCY (pfam14293), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), TraG-D_C (pfam12696), Intron_maturas2 (pfam01348), INTN1_C_like (cd01185)

Seq: DS990118.1 Bacteroides plebeius DSM 17135 Scfld_02_1 genomic scaffold, whole genome shotgun sequence (287742 bp)
Overview 1 RT 1: 218238-227717 bp Neighborhood of RT #1 [218238, 227717] RVT-DGRs Feature: gene Location: 218238-218546 bp Feature: gene Location: 218801-219304 bp Feature: gene Location: 219291-220592 bp Ori: EDY95320.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 219501-220179 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2195 01-220179 bp Feature: gene Location: 220794-220958 bp Feature: gene Location: 221258-227717 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs