myRT

myRT report for GCA_000188155.3_ASM18815v3

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Seq: KE124774.1 Methylocystis sp. ATCC 49242 strain Rockwell genomic scaffold Met49242_MAH.6, whole genome shotgun sequence (4316162 bp)
Overview 1 RT 1: 2167500-2172721 bp 2 RT 2: 2674378-2680647 bp 3 RT 3: 3605015-3609297 bp Neighborhood of RT #1 [2167500, 2172759] COG3547 DDE_Tnp_IS66 DDE_Tnp_IS66_C RVT-GII GIIM COG3436 TnpB_IS66 Neighborhood of RT #2 [2674378, 2680748] DUF87 YjgR RVT-UG7 AbiEii Tra5 Neighborhood of RT #3 [3605015, 3609297] TnpB_IS66 COG3436 RVT-GII GIIM DDE_Tnp_IS66 DDE_Tnp_IS66_C Feature: gene Location: 2167500-2168609 bp Feature: domain Description: COG3547 Location: 2167650-2168502 bp Feature: domain Description: COG3547 Location: 21 67650-21 68502 bp Feature: gene Location: 2168909-2169763 bp Feature: domain Description: DDE_Tnp_IS66 Location: 2168939-2169593 bp Feature: domain Description: DDE_Tnp_IS66 Location: 21 68939-21 69593 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2169614-2169725 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 21 6961 4-21 69725 bp Feature: gene Location: 2169816-2171069 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2170023-2170677 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 70023-21 70677 bp Feature: domain Description: GIIM Note: maturase Location: 2170764-2170971 bp Feature: domain Description: GIIM Note: maturase Location: 21 70764-21 70971 bp Feature: gene Location: 2171586-2172374 bp Feature: domain Description: COG3436 Location: 2171862-2172330 bp Feature: domain Description: COG3436 Location: 21 71 862-21 72330 bp Feature: gene Location: 2172427-2172759 bp Feature: domain Description: TnpB_IS66 Location: 2172433-2172721 bp Feature: domain Description: TnpB_IS66 Location: 21 72433-21 72721 bp Feature: gene Location: 2674378-2674563 bp Feature: gene Location: 2675052-2677244 bp Feature: domain Description: DUF87 Location: 2676243-2676462 bp Feature: domain Description: DUF87 Location: 2676243-2676462 bp Feature: domain Description: YjgR Location: 2676693-2677083 bp Feature: domain Description: YjgR Location: 2676693-2677083 bp Feature: gene Location: 2677265-2678860 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 2677673-2678081 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 2677673-2678081 bp Feature: gene Location: 2679087-2679821 bp Feature: domain Description: AbiEii Location: 2679174-2679708 bp Feature: domain Description: AbiEii Location: 26791 74-2679708 bp Feature: gene Location: 2679837-2680748 bp Feature: domain Description: Tra5 Location: 2679876-2680647 bp Feature: domain Description: Tra5 Location: 2679876-2680647 bp Feature: gene Location: 3605015-3605362 bp Feature: domain Description: TnpB_IS66 Location: 3605042-3605333 bp Feature: domain Description: TnpB_IS66 Location: 3605042-3605333 bp Feature: gene Location: 3605435-3606220 bp Feature: domain Description: COG3436 Location: 3605711-3606176 bp Feature: domain Description: COG3436 Location: 360571 1 -36061 76 bp Feature: gene Location: 3606737-3607990 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3606944-3607598 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3606944-3607598 bp Feature: domain Description: GIIM Note: maturase Location: 3607685-3607892 bp Feature: domain Description: GIIM Note: maturase Location: 3607685-3607892 bp Feature: gene Location: 3608043-3608927 bp Feature: domain Description: DDE_Tnp_IS66 Location: 3608073-3608754 bp Feature: domain Description: DDE_Tnp_IS66 Location: 3608073-3608754 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 3608775-3608886 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 3608775-3608886 bp Feature: gene Location: 3608911-3609297 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), RVT-GII, GIIM (pfam08388), COG3436 (Transposase ), TnpB_IS66 (pfam05717), DUF87 (pfam01935), YjgR (COG0433), RVT-UG7
AbiEii (pfam08843), Tra5 (COG2801)