myRT

myRT report for GCA_000188175.1_ASM18817v1

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Seq: GL830888.1 Phascolarctobacterium sp. YIT 12067 genomic scaffold Scfld88, whole genome shotgun sequence (71296 bp)
Overview 1 RT 1: 42080-48509 bp Neighborhood of RT #1 [42080, 48520] DEDD_Tnp_IS110 PRK10073 RVT-UG5 nitrilase RfbB Feature: gene Location: 42080-42355 bp Ori: EFY04785.1 Feature: domain Description: DEDD_Tnp_IS110 Location: 42149-42335 bp Feature: domain Description: DEDD_Tnp_IS1 1 0 Location: 421 49-42335 bp Feature: gene Location: 42571-43581 bp Ori: EFY04786.1 Feature: domain Description: PRK10073 Location: 42592-43255 bp Feature: domain Description: PRK1 0073 Location: 42592-43255 bp Feature: gene Location: 43851-47222 bp Ori: EFY04787.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 44352-44898 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 44352-44898 bp Feature: domain Description: nitrilase Location: 46410-47094 bp Feature: domain Description: nitrilase Location: 4641 0-47094 bp Feature: gene Location: 47322-47465 bp Feature: gene Location: 47558-48520 bp Ori: EFY04789.1 Gene: rfbB Feature: domain Description: RfbB Location: 47564-48509 bp Feature: domain Description: RfbB Location: 47564-48509 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DEDD_Tnp_IS110 (pfam01548), PRK10073 (putative glycosyl transferase; Provisional), RVT-UG5, nitrilase (cl11424), RfbB (COG1088)

Seq: GL830938.1 Phascolarctobacterium sp. YIT 12067 genomic scaffold Scfld389, whole genome shotgun sequence (76851 bp)
Overview 1 RT 1: 35943-41252 bp Neighborhood of RT #1 [35943, 41252] DUF3801 VirD4 RVT-GII VirD4 Feature: gene Location: 35943-36425 bp Ori: EFY03882.1 Feature: domain Description: DUF3801 Location: 36012-36411 bp Feature: domain Description: DUF3801 Location: 36012 -36411 bp Feature: gene Location: 36425-37228 bp Ori: EFY03883.1 Feature: domain Description: VirD4 Location: 36674-37166 bp Feature: domain Description: VirD4 Location: 36674-37166 bp Feature: gene Location: 37854-39764 bp Ori: EFY03884.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 38184-38928 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 38184-3892 8 bp Feature: gene Location: 39921-40919 bp Ori: EFY03885.1 Feature: domain Description: VirD4 Location: 40047-40815 bp Feature: domain Description: VirD4 Location: 40047-40815 bp Feature: gene Location: 40932-41252 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3801 (pfam12687), VirD4 (COG3505), RVT-GII