myRT

myRT report for GCA_000188795.2_ASM18879v2

Download annotations/find similar RTs

Seq: ADUU01000110.1 Shigella sonnei 53G gss53G.assembly.60, whole genome shotgun sequence (19942 bp)
Overview 1 RT 1: 7069-11005 bp Neighborhood of RT #1 [7069, 11055] DDE_Tnp_IS66_C RVT-GII COG4584 PRK09183 Feature: gene Location: 7069-7212 bp Ori: EFZ52106.1 Feature: domain Description: DDE_Tnp_IS66_C Location: 7078-7189 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 7078-71 89 bp Feature: gene Location: 7331-7447 bp Feature: gene Location: 7873-8457 bp Ori: EFZ52108.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7969-8431 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7969-8431 bp Feature: gene Location: 9086-10258 bp Ori: EFZ52109.1 Feature: domain Description: COG4584 Location: 9089-9926 bp Feature: domain Description: COG4584 Location: 9089-9926 bp Feature: gene Location: 10258-11055 bp Ori: EFZ52110.1 Feature: domain Description: PRK09183 Location: 10270-11005 bp Feature: domain Description: PRK091 83 Location: 1 0270-1 1 005 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66_C (pfam13817), RVT-GII, COG4584 (Transposase ), PRK09183 (transposase/IS protein; Provisional)

Seq: ADUU01000014.1 Shigella sonnei 53G gss53G.assembly.113, whole genome shotgun sequence (2602 bp)
Overview 1 RT 1: 410-2091 bp Neighborhood of RT #1 [410, 2234] DDE_Tnp_1 RVT-GII RVT-GII InsE Feature: gene Location: 410-1126 bp Ori: EFZ55079.1 Feature: domain Description: DDE_Tnp_1 Location: 416-1058 bp Feature: domain Description: DDE_Tnp_1 Location: 416-1058 bp Feature: gene Location: 1218-1421 bp Ori: EFZ55080.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1326-1416 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 132 6-1416 bp Feature: gene Location: 1524-1838 bp Ori: EFZ55081.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1527-1812 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 152 7-1812 bp Feature: gene Location: 1932-2234 bp Ori: EFZ55082.1 Feature: domain Description: InsE Location: 1935-2091 bp Feature: domain Description: InsE Location: 1935-2 091 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1 (pfam01609), RVT-GII, InsE (COG2963)

Seq: ADUU01000038.1 Shigella sonnei 53G gss53G.assembly.135, whole genome shotgun sequence (11191 bp)
Overview 1 RT 1: 2285-5866 bp Neighborhood of RT #1 [2285, 5868] RVT-GII Tra5 PRK09409 Feature: gene Location: 2285-2416 bp Feature: gene Location: 2588-2743 bp Feature: gene Location: 3595-4722 bp Ori: EFZ53384.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3895-4552 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 895-4552 bp Feature: gene Location: 4735-4956 bp Ori: EFZ53385.1 Feature: domain Description: Tra5 Location: 4747-4939 bp Feature: domain Description: Tra5 Location: 4747-493 9 bp Feature: gene Location: 5077-5868 bp Ori: EFZ53386.1 Feature: domain Description: PRK09409 Location: 5080-5866 bp Feature: domain Description: PRK09409 Location: 5080-5866 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Tra5 (COG2801), PRK09409 (IS2 transposase TnpB; Reviewed)