myRT

myRT report for GCA_000188815.2_ASM18881v2

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Seq: ADUP01000014.1 Escherichia coli LT-68 gecLT68.assembly.22, whole genome shotgun sequence (16102 bp)
Overview 1 RT 1: 13395-15740 bp Neighborhood of RT #1 [13395, 15740] DDE_Tnp_IS66_C RVT-GII DDE_Tnp_IS66 Feature: gene Location: 13395-13508 bp Feature: gene Location: 13535-13678 bp Ori: EFZ60946.1 Feature: domain Description: DDE_Tnp_IS66_C Location: 13544-13655 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 1 3544-1 3655 bp Feature: gene Location: 14044-14913 bp Ori: EFZ60947.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14140-14794 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 41 40-1 4794 bp Feature: gene Location: 15481-15612 bp Ori: EFZ60948.1 Feature: domain Description: DDE_Tnp_IS66 Location: 15493-15586 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1 5493-1 5586 bp Feature: gene Location: 15612-15740 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66_C (pfam13817), RVT-GII, DDE_Tnp_IS66 (pfam03050)

Seq: ADUP01000063.1 Escherichia coli LT-68 gecLT68.assembly.9, whole genome shotgun sequence (1646 bp)
Overview 1 RT 1: 1-1644 bp Neighborhood of RT #1 [1, 1646] RVT-GII RVT-GII InsE HTH_23 Feature: gene Location: 1-156 bp Ori: EFZ55395.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 61-151 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 61-151 bp Feature: gene Location: 259-573 bp Ori: EFZ55396.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 262-547 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 62 -547 bp Feature: gene Location: 667-939 bp Ori: EFZ55397.1 Feature: domain Description: InsE Location: 670-796 bp Feature: domain Description: InsE Location: 670-796 bp Feature: gene Location: 1479-1646 bp Ori: EFZ55398.1 Feature: domain Description: HTH_23 Location: 1557-1644 bp Feature: domain Description: HTH_2 3 Location: 1557-1644 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, InsE (COG2963), HTH_23 (pfam13384)

Seq: ADUP01000062.1 Escherichia coli LT-68 gecLT68.assembly.8, whole genome shotgun sequence (1708 bp)
Overview 1 RT 1: 95-1543 bp Neighborhood of RT #1 [95, 1548] DDE_Tnp_1 RVT-GII Feature: gene Location: 95-334 bp Feature: gene Location: 537-1253 bp Ori: EFZ55400.1 Feature: domain Description: DDE_Tnp_1 Location: 543-1185 bp Feature: domain Description: DDE_Tnp_1 Location: 543 -1185 bp Feature: gene Location: 1345-1548 bp Ori: EFZ55401.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1453-1543 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1453 -1543 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1 (pfam01609), RVT-GII