myRT

myRT report for GCA_000189595.1_Clos_symb_WAL_14163_V1

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Seq: GL834310.1 Clostridium symbiosum WAL-14163 genomic scaffold supercont1.6, whole genome shotgun sequence (328026 bp)
Overview 1 RT 1: 35925-38520 bp 2 RT 2: 104425-108749 bp Neighborhood of RT #1 [35925, 38525] Phage_holin_Dp1 RVT-DGRs Phage_XkdX Neighborhood of RT #2 [104425, 109168] RVT-DGRs DUF2313 Feature: gene Location: 35925-36140 bp Feature: domain Description: Phage_holin_Dp1 Location: 35934-36120 bp Feature: domain Description: Phage_holin_Dp1 Location: 35934-361 20 bp Feature: gene Location: 36127-36462 bp Feature: gene Location: 36488-37684 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 36680-37499 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 36680-37499 bp Feature: gene Location: 37897-38385 bp Feature: gene Location: 38382-38525 bp Feature: domain Description: Phage_XkdX Location: 38403-38520 bp Feature: domain Description: Phage_XkdX Location: 38403-38520 bp Feature: gene Location: 104425-104601 bp Feature: gene Location: 104751-105017 bp Feature: gene Location: 104977-106167 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 105169-105946 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1 051 69-1 05946 bp Feature: gene Location: 106554-108359 bp Feature: gene Location: 108374-109168 bp Feature: domain Description: DUF2313 Location: 108392-108749 bp Feature: domain Description: DUF231 3 Location: 1 08392-1 08749 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_holin_Dp1 (pfam16938), RVT-DGRs, Phage_XkdX (pfam09693), DUF2313 (pfam10076)

Seq: GL834313.1 Clostridium symbiosum WAL-14163 genomic scaffold supercont1.9, whole genome shotgun sequence (232044 bp)
Overview 1 RT 1: 118677-122068 bp Neighborhood of RT #1 [118677, 122175] nirV Avd_like RVT-DGRs DUF16 Feature: gene Location: 118677-119729 bp Feature: domain Description: nirV Location: 118923-119244 bp Feature: domain Description: nirV Location: 11892 3-1192 44 bp Feature: gene Location: 119882-120217 bp Feature: domain Description: Avd_like Location: 119900-120206 bp Feature: domain Description: Avd_like Location: 119900-12 02 06 bp Feature: gene Location: 120500-121606 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 120704-121442 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 12 0704-12 1442 bp Feature: gene Location: 121599-121826 bp Feature: gene Location: 121867-122175 bp Feature: domain Description: DUF16 Location: 121882-122068 bp Feature: domain Description: DUF16 Location: 12 1882 -12 2 068 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT nirV (LOAD_nirV), Avd_like (cd16376), RVT-DGRs, DUF16 (pfam01519)

Seq: GL834320.1 Clostridium symbiosum WAL-14163 genomic scaffold supercont1.16, whole genome shotgun sequence (116518 bp)
Overview 1 RT 1: 1-3682 bp 2 RT 2: 37409-42976 bp Neighborhood of RT #1 [1, 3711] VirD4 RVT-GII Intron_maturas2 HNHc DUF3801 Neighborhood of RT #2 [37409, 42987] MviM MviM LysR RVT-Retrons YuiF COG1786 Feature: gene Location: 1-270 bp Feature: domain Description: VirD4 Location: 43-241 bp Feature: domain Description: VirD4 Location: 43 -241 bp Feature: gene Location: 361-2178 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 625-1444 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 625-1444 bp Feature: domain Description: Intron_maturas2 Location: 1516-1819 bp Feature: domain Description: Intron_maturas2 Location: 1516-1819 bp Feature: domain Description: HNHc Note: nucleases Location: 1999-2143 bp Feature: domain Description: HNHc Note: nucleases Location: 1999-2143 bp Feature: gene Location: 2738-3238 bp Feature: gene Location: 3235-3711 bp Feature: domain Description: DUF3801 Location: 3301-3682 bp Feature: domain Description: DUF3 801 Location: 3 3 01-3 682 bp Feature: gene Location: 37409-38593 bp Feature: domain Description: MviM Location: 37430-37727 bp Feature: domain Description: MviM Location: 3 743 0-3 7727 bp Feature: domain Description: MviM Location: 37802-38585 bp Feature: domain Description: MviM Location: 3 7802-3 8585 bp Feature: gene Location: 38915-39859 bp Feature: domain Description: LysR Location: 38954-39812 bp Feature: domain Description: LysR Location: 3 8954-3 9812 bp Feature: gene Location: 39918-40904 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 40083-40638 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 40083 -4063 8 bp Feature: gene Location: 41202-42524 bp Feature: domain Description: YuiF Location: 41223-42522 bp Feature: domain Description: YuiF Location: 41223 -42522 bp Feature: gene Location: 42577-42987 bp Feature: domain Description: COG1786 Location: 42592-42976 bp Feature: domain Description: COG1786 Location: 42592-42976 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3801 (pfam12687), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), MviM (COG0673), LysR (COG0583), RVT-Retrons, YuiF (COG2056), COG1786 (Swiveling domain associated with predicted aconitase )

Seq: GL834330.1 Clostridium symbiosum WAL-14163 genomic scaffold supercont1.26, whole genome shotgun sequence (2820 bp)
Overview 1 RT 1: 527-1691 bp Neighborhood of RT #1 [527, 1858] RVT-GII GIIM Feature: gene Location: 527-1858 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 782-1409 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 782-14 09 bp Feature: domain Description: GIIM Note: maturase Location: 1463-1691 bp Feature: domain Description: GIIM Note: maturase Location: 14 63-1691 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: GL834323.1 Clostridium symbiosum WAL-14163 genomic scaffold supercont1.19, whole genome shotgun sequence (56578 bp)
Overview 1 RT 1: 20-3860 bp Neighborhood of RT #1 [20, 4093] T4SS-DNA_transf RVT-GII RVT-GII TraG-D_C Feature: gene Location: 20-772 bp Feature: domain Description: T4SS-DNA_transf Location: 44-716 bp Feature: domain Description: T4SS-DNA_transf Location: 44-716 bp Feature: gene Location: 1529-2248 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1838-2225 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1838-2225 bp Feature: gene Location: 2251-2829 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2254-2593 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 225 4-25 93 bp Feature: gene Location: 2852-3439 bp Feature: gene Location: 3464-4093 bp Feature: domain Description: TraG-D_C Location: 3542-3860 bp Feature: domain Description: TraG-D_C Location: 35 42-3860 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, T4SS-DNA_transf (pfam02534), TraG-D_C (pfam12696)

Seq: GL834333.1 Clostridium symbiosum WAL-14163 genomic scaffold supercont1.29, whole genome shotgun sequence (2335 bp)
Overview 1 RT 1: 1-2303 bp Neighborhood of RT #1 [1, 2314] RVT-GII DEDD_Tnp_IS110 COG3547 group_II_RT_mat Feature: gene Location: 1-324 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7-307 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7-307 bp Feature: gene Location: 410-1624 bp Feature: domain Description: DEDD_Tnp_IS110 Location: 425-893 bp Feature: domain Description: DEDD_Tnp_IS110 Location: 425-893 bp Feature: domain Description: COG3547 Location: 1127-1487 bp Feature: domain Description: COG3547 Location: 1127-1487 bp Feature: gene Location: 1940-2314 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 1943-2303 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 1943-2303 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, group_II_RT_mat (TIGR04416), DEDD_Tnp_IS110 (pfam01548), COG3547 (Transposase )

Seq: GL834308.1 Clostridium symbiosum WAL-14163 genomic scaffold supercont1.4, whole genome shotgun sequence (337964 bp)
Overview 1 RT 1: 84830-92018 bp Neighborhood of RT #1 [84830, 92018] FGE-sulfatase Avd_like RVT-DGRs GIIM Feature: gene Location: 84830-85933 bp Feature: domain Description: FGE-sulfatase Location: 85100-85424 bp Feature: domain Description: FGE-sulfatase Location: 85100-85424 bp Feature: gene Location: 86078-86680 bp Feature: domain Description: Avd_like Location: 86225-86528 bp Feature: domain Description: Avd_like Location: 86225-86528 bp Feature: gene Location: 88485-89687 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 88704-89463 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 887 04-89463 bp Feature: gene Location: 91335-91646 bp Feature: domain Description: GIIM Note: maturase Location: 91344-91479 bp Feature: domain Description: GIIM Note: maturase Location: 91344-9147 9 bp Feature: gene Location: 91746-92018 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FGE-sulfatase (pfam03781), Avd_like (cd16376), RVT-DGRs, GIIM (pfam08388)

Seq: GL834319.1 Clostridium symbiosum WAL-14163 genomic scaffold supercont1.15, whole genome shotgun sequence (149583 bp)
Overview 1 RT 1: 1-442 bp Neighborhood of RT #1 [1, 510] RVT-GII GIIM Feature: gene Location: 1-510 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7-157 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7-157 bp Feature: domain Description: GIIM Note: maturase Location: 235-442 bp Feature: domain Description: GIIM Note: maturase Location: 235-442 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)