myRT

myRT report for GCA_000189615.1_Clos_symb_WAL_14673_V2

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Seq: GL834358.1 Clostridium symbiosum WAL-14673 genomic scaffold supercont1.2, whole genome shotgun sequence (697456 bp)
Overview 1 RT 1: 21813-26833 bp 2 RT 2: 215961-220318 bp 3 RT 3: 691849-696962 bp Neighborhood of RT #1 [21813, 26874] COG4709 DUF4097 RVT-GII GIIM LytT SASP Neighborhood of RT #2 [215961, 220335] YsxB-like RpmA RVT-GII GIIM obgE YhbY Neighborhood of RT #3 [691849, 696964] MviM MviM LysR RVT-Retrons YuiF Feature: gene Location: 21813-22703 bp Ori: EGB19941.1 Feature: domain Description: COG4709 Location: 21816-22002 bp Feature: domain Description: COG4709 Location: 21 81 6-22002 bp Feature: gene Location: 22700-23635 bp Ori: EGB19942.1 Feature: domain Description: DUF4097 Location: 23000-23399 bp Feature: domain Description: DUF4097 Location: 23000-23399 bp Feature: gene Location: 24219-25544 bp Ori: EGB19943.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24468-25095 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24468-25095 bp Feature: domain Description: GIIM Note: maturase Location: 25149-25368 bp Feature: domain Description: GIIM Note: maturase Location: 251 49-25368 bp Feature: gene Location: 25632-26354 bp Ori: EGB19944.1 Feature: domain Description: LytT Location: 25635-26304 bp Feature: domain Description: LytT Location: 25635-26304 bp Feature: gene Location: 26656-26874 bp Ori: EGB19945.1 Feature: domain Description: SASP Location: 26716-26833 bp Feature: domain Description: SASP Location: 2671 6-26833 bp Feature: gene Location: 215961-216290 bp Ori: EGB19828.1 Feature: domain Description: YsxB-like Location: 215964-216273 bp Feature: domain Description: YsxB-like Location: 21 5964-21 6273 bp Feature: gene Location: 216294-216584 bp Ori: EGB19829.1 Gene: rpmA Feature: domain Description: RpmA Location: 216321-216570 bp Feature: domain Description: RpmA Location: 21 6321 -21 6570 bp Feature: gene Location: 217765-218517 bp Ori: EGB19805.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 217768-218068 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 7768-21 8068 bp Feature: domain Description: GIIM Note: maturase Location: 218122-218350 bp Feature: domain Description: GIIM Note: maturase Location: 21 81 22-21 8350 bp Feature: gene Location: 218696-219979 bp Ori: EGB19806.1 Gene: cgtA Feature: domain Description: obgE Location: 218699-219974 bp Feature: domain Description: obgE Location: 21 8699-21 9974 bp Feature: gene Location: 220039-220335 bp Ori: EGB19807.1 Feature: domain Description: YhbY Location: 220042-220318 bp Feature: domain Description: YhbY Location: 220042-22031 8 bp Feature: gene Location: 691849-693033 bp Ori: EGB19436.1 Feature: domain Description: MviM Location: 691870-692167 bp Feature: domain Description: MviM Location: 691 870-6921 67 bp Feature: domain Description: MviM Location: 692242-693025 bp Feature: domain Description: MviM Location: 692242-693025 bp Feature: gene Location: 693355-694299 bp Ori: EGB19437.1 Feature: domain Description: LysR Location: 693394-694252 bp Feature: domain Description: LysR Location: 693394-694252 bp Feature: gene Location: 694358-695344 bp Ori: EGB19438.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 694523-695078 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 694523-695078 bp Feature: gene Location: 695642-696964 bp Ori: EGB19439.1 Feature: domain Description: YuiF Location: 695663-696962 bp Feature: domain Description: YuiF Location: 695663-696962 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4709 (Uncharacterized membrane protein ), DUF4097 (pfam13349), RVT-GII, GIIM (pfam08388), LytT (COG3279), SASP (pfam00269), YsxB-like, RpmA (COG0211), obgE (PRK12299), YhbY (COG1534)
MviM (COG0673), LysR (COG0583), RVT-Retrons, YuiF (COG2056)

Seq: GL834369.1 Clostridium symbiosum WAL-14673 genomic scaffold supercont1.13, whole genome shotgun sequence (89986 bp)
Overview 1 RT 1: 6449-11824 bp Neighborhood of RT #1 [6449, 11889] AcrR RVT-GII GIIM CDP-ME_synthetase T6A_TsaD_YgjD Feature: gene Location: 6449-7069 bp Ori: EGB16883.1 Feature: domain Description: AcrR Location: 6479-6785 bp Feature: domain Description: AcrR Location: 6479-6785 bp Feature: gene Location: 7302-7787 bp Feature: gene Location: 7997-8596 bp Ori: EGB16885.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8006-8147 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8006-8147 bp Feature: domain Description: GIIM Note: maturase Location: 8201-8429 bp Feature: domain Description: GIIM Note: maturase Location: 82 01-842 9 bp Feature: gene Location: 10130-10852 bp Ori: EGB16866.1 Gene: ispD Feature: domain Description: CDP-ME_synthetase Location: 10160-10835 bp Feature: domain Description: CDP-ME_synthetase Location: 10160-10835 bp Feature: gene Location: 10852-11889 bp Ori: EGB16867.1 Feature: domain Description: T6A_TsaD_YgjD Location: 10888-11824 bp Feature: domain Description: T6A_TsaD_YgjD Location: 10888-1182 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AcrR (COG1309), RVT-GII, GIIM (pfam08388), CDP-ME_synthetase (cd02516), T6A_TsaD_YgjD (TIGR03723)

Seq: GL834361.1 Clostridium symbiosum WAL-14673 genomic scaffold supercont1.5, whole genome shotgun sequence (427100 bp)
Overview 1 RT 1: 243805-252253 bp Neighborhood of RT #1 [243805, 252282] SR_TndX_transposase Recombinase Zn_ribbon_recom DUF4368 RVT-GII Intron_maturas2 HNHc VirD4 RVT-GII Intron_maturas2 HNHc DUF3801 Feature: gene Location: 243805-245685 bp Ori: EGB18107.1 Feature: domain Description: SR_TndX_transposase Location: 243829-244237 bp Feature: domain Description: SR_TndX_transposase Location: 243 829-24423 7 bp Feature: domain Description: Recombinase Location: 244336-244696 bp Feature: domain Description: Recombinase Location: 2443 3 6-244696 bp Feature: domain Description: Zn_ribbon_recom Location: 244741-244924 bp Feature: domain Description: Zn_ribbon_recom Location: 244741-244924 bp Feature: domain Description: DUF4368 Location: 245209-245395 bp Feature: domain Description: DUF43 68 Location: 245209-2453 95 bp Feature: gene Location: 245759-246088 bp Feature: gene Location: 246160-247950 bp Ori: EGB18109.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 246433-247243 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24643 3 -247243 bp Feature: domain Description: Intron_maturas2 Location: 247420-247609 bp Feature: domain Description: Intron_maturas2 Location: 247420-247609 bp Feature: domain Description: HNHc Note: nucleases Location: 247786-247930 bp Feature: domain Description: HNHc Note: nucleases Location: 247786-24793 0 bp Feature: gene Location: 248578-248841 bp Ori: EGB18110.1 Feature: domain Description: VirD4 Location: 248620-248815 bp Feature: domain Description: VirD4 Location: 248620-248815 bp Feature: gene Location: 248932-250749 bp Ori: EGB18111.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 249196-250015 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 249196-250015 bp Feature: domain Description: Intron_maturas2 Location: 250087-250390 bp Feature: domain Description: Intron_maturas2 Location: 250087-2503 90 bp Feature: domain Description: HNHc Note: nucleases Location: 250570-250714 bp Feature: domain Description: HNHc Note: nucleases Location: 250570-250714 bp Feature: gene Location: 251309-251809 bp Feature: gene Location: 251806-252282 bp Ori: EGB18113.1 Feature: domain Description: DUF3801 Location: 251869-252253 bp Feature: domain Description: DUF3 801 Location: 251869-252253 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SR_TndX_transposase (cd03770), Recombinase (pfam07508), Zn_ribbon_recom (pfam13408), DUF4368 (pfam14287), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), VirD4 (COG3505), DUF3801 (pfam12687)

Seq: GL834359.1 Clostridium symbiosum WAL-14673 genomic scaffold supercont1.3, whole genome shotgun sequence (647965 bp)
Overview 1 RT 1: 150697-157136 bp Neighborhood of RT #1 [150697, 157639] GATase1_DJ-1 DUF975 RVT-DGRs Avd_like FGE-sulfatase Feature: gene Location: 150697-151251 bp Ori: EGB19303.1 Feature: domain Description: GATase1_DJ-1 Location: 150709-151192 bp Feature: domain Description: GATase1_DJ-1 Location: 150709-151192 bp Feature: gene Location: 151308-152150 bp Ori: EGB19304.1 Feature: domain Description: DUF975 Location: 151710-152001 bp Feature: domain Description: DUF975 Location: 151710-152001 bp Feature: gene Location: 152882-154084 bp Ori: EGB19305.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 153101-153860 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 153101-153860 bp Feature: gene Location: 155331-155933 bp Ori: EGB19306.1 Feature: domain Description: Avd_like Location: 155478-155781 bp Feature: domain Description: Avd_like Location: 1554 78-155781 bp Feature: gene Location: 156542-157639 bp Ori: EGB19178.1 Feature: domain Description: FGE-sulfatase Location: 156812-157136 bp Feature: domain Description: FGE-sulfatase Location: 156812-157136 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GATase1_DJ-1 (cd03135), DUF975 (pfam06161), RVT-DGRs, Avd_like (cd16376), FGE-sulfatase (pfam03781)

Seq: GL834380.1 Clostridium symbiosum WAL-14673 genomic scaffold supercont1.24, whole genome shotgun sequence (2379 bp)
Overview 1 RT 1: 25-2142 bp Neighborhood of RT #1 [25, 2309] PRK05912 RVT-GII GIIM Feature: gene Location: 25-285 bp Ori: EGB16703.1 Feature: domain Description: PRK05912 Location: 34-265 bp Feature: domain Description: PRK05 912 Location: 34-265 bp Feature: gene Location: 978-2309 bp Ori: EGB16704.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1233-1860 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1233-1860 bp Feature: domain Description: GIIM Note: maturase Location: 1914-2142 bp Feature: domain Description: GIIM Note: maturase Location: 1914-2142 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK05912 (tyrosyl-tRNA synthetase; Validated), RVT-GII, GIIM (pfam08388)

Seq: GL834357.1 Clostridium symbiosum WAL-14673 genomic scaffold supercont1.1, whole genome shotgun sequence (1043879 bp)
Overview 1 RT 1: 511995-515857 bp Neighborhood of RT #1 [511995, 515916] Mtd_N RVT-DGRs Phage_XkdX SNARE_Qa SNARE_Qa Feature: gene Location: 511995-512381 bp Ori: EGB20427.1 Feature: domain Description: Mtd_N Location: 512019-512136 bp Feature: domain Description: Mtd_N Location: 512019-512136 bp Feature: gene Location: 512381-513619 bp Feature: gene Location: 514077-515375 bp Ori: EGB20429.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 514329-515034 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 514329-515034 bp Feature: gene Location: 515528-515680 bp Ori: EGB20430.1 Feature: domain Description: Phage_XkdX Location: 515549-515660 bp Feature: domain Description: Phage_XkdX Location: 515549-5156 6 0 bp Feature: gene Location: 515677-515916 bp Ori: EGB20431.1 Feature: domain Description: SNARE_Qa Location: 515698-515767 bp Feature: domain Description: SNARE_Qa Location: 5156 98-51576 7 bp Feature: domain Description: SNARE_Qa Location: 515797-515857 bp Feature: domain Description: SNARE_Qa Location: 515797-515857 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Mtd_N (pfam18454), RVT-DGRs, Phage_XkdX (pfam09693), SNARE_Qa (cd15840)