myRT

myRT report for GCA_000190355.1_ASM19035v1

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Seq: GL870812.1 Clostridium sp. D5 genomic scaffold supercont1.4, whole genome shotgun sequence (402542 bp)
Overview 1 RT 1: 357457-362211 bp Neighborhood of RT #1 [357457, 362211] HTH_19 RVT-Retrons Feature: gene Location: 357457-357633 bp Feature: gene Location: 357718-358014 bp Feature: domain Description: HTH_19 Location: 357727-357901 bp Feature: domain Description: HTH_1 9 Location: 357727-357901 bp Feature: gene Location: 358011-358943 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 358158-358707 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3581 58-358707 bp Feature: gene Location: 359067-359834 bp Feature: gene Location: 361192-362211 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_19 (pfam12844), RVT-Retrons

Seq: GL870811.1 Clostridium sp. D5 genomic scaffold supercont1.3, whole genome shotgun sequence (418904 bp)
Overview 1 RT 1: 110886-118246 bp Neighborhood of RT #1 [110886, 118320] UgpA UgpE RVT-GII YesN dCache_1 YesM Feature: gene Location: 110886-111794 bp Feature: domain Description: UgpA Location: 110898-111789 bp Feature: domain Description: UgpA Location: 110898-111789 bp Feature: gene Location: 111795-112610 bp Feature: domain Description: UgpE Location: 111810-112605 bp Feature: domain Description: UgpE Location: 111810-112 605 bp Feature: gene Location: 113677-114780 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 113737-114427 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 113737-11442 7 bp Feature: gene Location: 114979-116502 bp Feature: domain Description: YesN Location: 114997-116497 bp Feature: domain Description: YesN Location: 114997-116497 bp Feature: gene Location: 116566-118320 bp Feature: domain Description: dCache_1 Location: 116635-117118 bp Feature: domain Description: dCache_1 Location: 116635-117118 bp Feature: domain Description: YesM Location: 117310-118246 bp Feature: domain Description: YesM Location: 117310-1182 46 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT UgpA (COG1175), UgpE (COG0395), RVT-GII, YesN (COG4753), dCache_1 (pfam02743), YesM (COG2972)

Seq: GL870815.1 Clostridium sp. D5 genomic scaffold supercont1.7, whole genome shotgun sequence (263337 bp)
Overview 1 RT 1: 196474-202008 bp Neighborhood of RT #1 [196474, 202025] DUF3801 T4SS-DNA_transf RVT-GII Intron_maturas2 TraG-D_C PRK13857 Feature: gene Location: 196474-197232 bp Feature: domain Description: DUF3801 Location: 196564-197152 bp Feature: domain Description: DUF3 801 Location: 196564-197152 bp Feature: gene Location: 197320-198573 bp Feature: domain Description: T4SS-DNA_transf Location: 197671-198532 bp Feature: domain Description: T4SS-DNA_transf Location: 197671-19853 2 bp Feature: gene Location: 199125-200939 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 199389-200220 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1993 89-200220 bp Feature: domain Description: Intron_maturas2 Location: 200289-200598 bp Feature: domain Description: Intron_maturas2 Location: 200289-200598 bp Feature: gene Location: 201093-201650 bp Feature: domain Description: TraG-D_C Location: 201096-201378 bp Feature: domain Description: TraG-D_C Location: 201096-2013 78 bp Feature: gene Location: 201672-202025 bp Feature: domain Description: PRK13857 Location: 201786-202008 bp Feature: domain Description: PRK13 857 Location: 201786-202008 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3801 (pfam12687), T4SS-DNA_transf (pfam02534), RVT-GII, Intron_maturas2 (pfam01348), TraG-D_C (pfam12696), PRK13857 (pilin major subunit VirB2)

Seq: GL870830.1 Clostridium sp. D5 genomic scaffold supercont1.22, whole genome shotgun sequence (2744 bp)
Overview 1 RT 1: 704-1778 bp Neighborhood of RT #1 [704, 2614] RVT-GII Feature: gene Location: 704-2614 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1034-1778 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1034 -1778 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: GL870836.1 Clostridium sp. D5 genomic scaffold supercont1.28, whole genome shotgun sequence (1892 bp)
Overview 1 RT 1: 447-1590 bp Neighborhood of RT #1 [447, 1799] RVT-GII GIIM Feature: gene Location: 447-1799 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 708-1326 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 708-1326 bp Feature: domain Description: GIIM Note: maturase Location: 1380-1590 bp Feature: domain Description: GIIM Note: maturase Location: 1380-15 90 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: GL870847.1 Clostridium sp. D5 genomic scaffold supercont1.39, whole genome shotgun sequence (798 bp)
Overview 1 RT 1: 1-424 bp Neighborhood of RT #1 [1, 437] RVT-GII Feature: gene Location: 1-437 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 256-424 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 256 -424 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII