myRT

myRT report for GCA_000190455.3_ASM19045v3

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Seq: AEWE02000062.1 Pseudomonas sp. TJI-51 P.Putida_TJI51_contig_62, whole genome shotgun sequence (43723 bp)
Overview 1 RT 1: 1-4144 bp Neighborhood of RT #1 [1, 4149] RVT-GII LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 DDE_Tnp_IS66_C TnpB_IS66 Feature: gene Location: 1-201 bp Feature: gene Location: 336-1928 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 840-1530 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 840-1 530 bp Feature: gene Location: 2236-3771 bp Feature: domain Description: LZ_Tnp_IS66 Location: 2344-2557 bp Feature: domain Description: LZ_Tnp_IS66 Location: 2344-2557 bp Feature: domain Description: zf-IS66 Location: 2587-2710 bp Feature: domain Description: zf-IS66 Location: 2587-271 0 bp Feature: domain Description: DDE_Tnp_IS66 Location: 2755-3610 bp Feature: domain Description: DDE_Tnp_IS66 Location: 2755-361 0 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 3631-3745 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 3631 -3745 bp Feature: gene Location: 3925-4149 bp Feature: domain Description: TnpB_IS66 Location: 3955-4144 bp Feature: domain Description: TnpB_IS66 Location: 3955-41 44 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), RVT-GII, TnpB_IS66 (pfam05717)

Seq: AEWE02000138.1 Pseudomonas sp. TJI-51 P.Putida_TJI51_contig_138, whole genome shotgun sequence (14552 bp)
Overview 1 RT 1: 5618-11889 bp Neighborhood of RT #1 [5618, 11921] CaiB PRK13348 PBP2_LTTR_like_1 RVT-Retrons MFS_MucK Feature: gene Location: 5618-6823 bp Feature: domain Description: CaiB Location: 5648-6821 bp Feature: domain Description: CaiB Location: 5648-682 1 bp Feature: gene Location: 6995-7915 bp Feature: domain Description: PRK13348 Location: 7007-7217 bp Feature: domain Description: PRK13348 Location: 7007-72 17 bp Feature: domain Description: PBP2_LTTR_like_1 Location: 7280-7871 bp Feature: domain Description: PBP2 _LTTR_like_1 Location: 72 80-7871 bp Feature: gene Location: 8866-9609 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 8869-9337 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 8869-9337 bp Feature: gene Location: 10027-10164 bp Feature: gene Location: 10602-11921 bp Feature: domain Description: MFS_MucK Location: 10698-11889 bp Feature: domain Description: MFS_MucK Location: 10698-11889 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CaiB (COG1804), PRK13348 (HTH-type transcriptional regulator ArgP), PBP2_LTTR_like_1 (cd08421), RVT-Retrons