myRT

myRT report for GCA_000190955.1_ASM19095v1

Download annotations/find similar RTs

Seq: GL872049.1 Escherichia coli M863 genomic scaffold supercont2.9, whole genome shotgun sequence (161535 bp)
Overview 1 RT 1: 71818-77421 bp Neighborhood of RT #1 [71818, 77432] HigB-like_toxin GIIM RVT-GII PinE PRK15061 Feature: gene Location: 71818-72114 bp Feature: domain Description: HigB-like_toxin Location: 71842-72112 bp Feature: domain Description: HigB-like_toxin Location: 71 842-721 1 2 bp Feature: gene Location: 72264-72605 bp Feature: domain Description: GIIM Note: maturase Location: 72309-72519 bp Feature: domain Description: GIIM Note: maturase Location: 72309-7251 9 bp Feature: gene Location: 72596-73507 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 72800-73394 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 72800-73394 bp Feature: gene Location: 74342-74920 bp Feature: domain Description: PinE Location: 74360-74912 bp Feature: domain Description: PinE Location: 74360-7491 2 bp Feature: gene Location: 75222-77432 bp Feature: domain Description: PRK15061 Location: 75291-77421 bp Feature: domain Description: PRK1 5061 Location: 75291 -77421 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HigB-like_toxin (pfam05015), GIIM (pfam08388), RVT-GII, PinE (COG1961), PRK15061 (catalase/peroxidase)

Seq: GL872065.1 Escherichia coli M863 genomic scaffold supercont2.25, whole genome shotgun sequence (2455 bp)
Overview 1 RT 1: 201-2298 bp Neighborhood of RT #1 [201, 2390] RVT-GII GIIM GIIM Feature: gene Location: 201-1454 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 408-1065 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 408-1065 bp Feature: domain Description: GIIM Note: maturase Location: 1155-1362 bp Feature: domain Description: GIIM Note: maturase Location: 1155-1362 bp Feature: gene Location: 2088-2390 bp Feature: domain Description: GIIM Note: maturase Location: 2100-2298 bp Feature: domain Description: GIIM Note: maturase Location: 2 100-2 2 98 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: GL872044.1 Escherichia coli M863 genomic scaffold supercont2.4, whole genome shotgun sequence (548349 bp)
Overview 1 RT 1: 482218-488919 bp Neighborhood of RT #1 [482218, 488921] trmE INT_P4_C RVT-Retrons AAA_25 Feature: gene Location: 482218-483582 bp Feature: domain Description: trmE Location: 482221-483580 bp Feature: domain Description: trmE Location: 482221-483 580 bp Feature: gene Location: 484343-485122 bp Feature: domain Description: INT_P4_C Location: 484520-485051 bp Feature: domain Description: INT_P4_C Location: 484520-485051 bp Feature: gene Location: 486409-487344 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 486520-487105 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 486520-487105 bp Feature: gene Location: 488256-488414 bp Feature: gene Location: 488418-488921 bp Feature: domain Description: AAA_25 Location: 488472-488919 bp Feature: domain Description: AAA_25 Location: 488472-488919 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT trmE (PRK05291), INT_P4_C (cd00801), RVT-Retrons, AAA_25 (pfam13481)

Seq: GL872041.1 Escherichia coli M863 genomic scaffold supercont2.1, whole genome shotgun sequence (1152030 bp)
Overview 1 RT 1: 376469-382328 bp Neighborhood of RT #1 [376469, 382345] PRK11018 PRK09951 RVT-GII GIIM InsQ OrfB_Zn_ribbon HTH_ARAC Feature: gene Location: 376469-376702 bp Feature: domain Description: PRK11018 Location: 376472-376700 bp Feature: domain Description: PRK11018 Location: 3764 72-376700 bp Feature: gene Location: 376811-377482 bp Feature: domain Description: PRK09951 Location: 376814-377477 bp Feature: domain Description: PRK09951 Location: 376814 -3774 77 bp Feature: gene Location: 377567-378937 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 377903-378515 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 377903-378515 bp Feature: domain Description: GIIM Note: maturase Location: 378575-378779 bp Feature: domain Description: GIIM Note: maturase Location: 378575-378779 bp Feature: gene Location: 379354-380112 bp Feature: domain Description: InsQ Location: 379363-379750 bp Feature: domain Description: InsQ Location: 379363-379750 bp Feature: domain Description: OrfB_Zn_ribbon Location: 379816-380017 bp Feature: domain Description: OrfB_Zn_ribbon Location: 379816-380017 bp Feature: gene Location: 381548-382345 bp Feature: domain Description: HTH_ARAC Location: 382082-382328 bp Feature: domain Description: HTH_ARAC Location: 382082-382328 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK11018 (putative sulfurtransferase YedF), PRK09951 (hypothetical protein; Provisional), RVT-GII, GIIM (pfam08388), InsQ (COG0675), OrfB_Zn_ribbon (pfam07282), HTH_ARAC (smart00342)