myRT

myRT report for GCA_000193895.2_ASM19389v2

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Seq: AERM01000035.1 Shigella dysenteriae CDC 74-1112 SDB.Contig391_1, whole genome shotgun sequence (72854 bp)
Overview 1 RT 1: 44139-51062 bp Neighborhood of RT #1 [44139, 51181] prfC PRK10597 RVT-Retrons TIR_2 Caudo_TAP Phage_fiber_2 34 Collar Phage_fiber Phage_fiber Phage_fiber Phage_fiber Phage_fiber Feature: gene Location: 44139-45713 bp Feature: domain Description: prfC Location: 44148-45711 bp Feature: domain Description: prfC Location: 441 48-4571 1 bp Feature: gene Location: 45945-46205 bp Feature: domain Description: PRK10597 Location: 45948-46188 bp Feature: domain Description: PRK1 0597 Location: 45948-461 88 bp Feature: gene Location: 46565-48169 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 46856-47447 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 46856-47447 bp Feature: domain Description: TIR_2 Location: 47774-48062 bp Feature: domain Description: TIR_2 Location: 47774-48062 bp Feature: gene Location: 48615-49199 bp Feature: domain Description: Caudo_TAP Location: 48831-49188 bp Feature: domain Description: Caudo_TAP Location: 48831 -491 88 bp Feature: gene Location: 49199-51181 bp Feature: domain Description: Phage_fiber_2 Location: 49220-49340 bp Feature: domain Description: Phage_fiber_2 Location: 49220-49340 bp Feature: domain Description: 34 Location: 49934-50273 bp Feature: domain Description: 34 Location: 49934-50273 bp Feature: domain Description: Collar Location: 50552-50690 bp Feature: domain Description: Collar Location: 50552-50690 bp Feature: domain Description: Phage_fiber Location: 50741-50780 bp Feature: domain Description: Phage_fiber Location: 50741 -50780 bp Feature: domain Description: Phage_fiber Location: 50837-50876 bp Feature: domain Description: Phage_fiber Location: 50837-50876 bp Feature: domain Description: Phage_fiber Location: 50882-50909 bp Feature: domain Description: Phage_fiber Location: 50882-50909 bp Feature: domain Description: Phage_fiber Location: 50984-51023 bp Feature: domain Description: Phage_fiber Location: 50984-51 023 bp Feature: domain Description: Phage_fiber Location: 51029-51062 bp Feature: domain Description: Phage_fiber Location: 51 029-51 062 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT prfC (TIGR00503), PRK10597 (DNA damage-inducible protein I; Provisional), RVT-Retrons, TIR_2 (pfam13676), Caudo_TAP (pfam02413), Phage_fiber_2 (pfam03406), 34 (PHA02584), Collar (pfam07484), Phage_fiber (pfam03335)

Seq: AERM01000203.1 Shigella dysenteriae CDC 74-1112 SDB.Contig372_1, whole genome shotgun sequence (62476 bp)
Overview 1 RT 1: 46045-48993 bp Neighborhood of RT #1 [46045, 48993] PHA02517 DDE_Tnp_IS66 RVT-GII GIIM DDE_Tnp_IS66_C Feature: gene Location: 46045-46677 bp Feature: domain Description: PHA02517 Location: 46048-46663 bp Feature: domain Description: PHA02 517 Location: 46048-46663 bp Feature: gene Location: 46753-46890 bp Feature: domain Description: DDE_Tnp_IS66 Location: 46765-46864 bp Feature: domain Description: DDE_Tnp_IS66 Location: 46765-46864 bp Feature: gene Location: 47458-48585 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 47554-48208 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 47554-482 08 bp Feature: domain Description: GIIM Note: maturase Location: 48286-48508 bp Feature: domain Description: GIIM Note: maturase Location: 482 86-48508 bp Feature: gene Location: 48704-48847 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 48713-48824 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 48713-4882 4 bp Feature: gene Location: 48874-48993 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), DDE_Tnp_IS66 (pfam03050), RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66_C (pfam13817)