myRT

myRT report for GCA_000193915.2_ASM19391v2

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Seq: AERN01000104.1 Shigella boydii ATCC 9905 SGB.Contig153_1, whole genome shotgun sequence (94511 bp)
Overview 1 RT 1: 6775-9826 bp Neighborhood of RT #1 [6775, 9840] PHA02517 DDE_Tnp_IS66 RVT-GII GIIM DDE_Tnp_IS66_C COG3547 Feature: gene Location: 6775-7146 bp Ori: EFW52763.1 Feature: domain Description: PHA02517 Location: 6778-7144 bp Feature: domain Description: PHA0251 7 Location: 6778-71 44 bp Feature: gene Location: 7234-7371 bp Ori: EFW52764.1 Feature: domain Description: DDE_Tnp_IS66 Location: 7246-7345 bp Feature: domain Description: DDE_Tnp_IS66 Location: 7246-7345 bp Feature: gene Location: 7939-9066 bp Ori: EFW52765.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8035-8689 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8035-8689 bp Feature: domain Description: GIIM Note: maturase Location: 8767-8989 bp Feature: domain Description: GIIM Note: maturase Location: 8767-8989 bp Feature: gene Location: 9185-9328 bp Ori: EFW52766.1 Feature: domain Description: DDE_Tnp_IS66_C Location: 9194-9305 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 91 94-9305 bp Feature: gene Location: 9355-9840 bp Ori: EFW52767.1 Feature: domain Description: COG3547 Location: 9373-9826 bp Feature: domain Description: COG3547 Location: 9373-9826 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), DDE_Tnp_IS66 (pfam03050), RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66_C (pfam13817), COG3547 (Transposase )

Seq: AERN01000027.1 Shigella boydii ATCC 9905 SGB.Contig114_1, whole genome shotgun sequence (16357 bp)
Overview 1 RT 1: 8637-12505 bp Neighborhood of RT #1 [8637, 12528] HTH_23 HTH_33 DDE_3 InsE RVT-GII RVT-GII DDE_Tnp_1 DDE_Tnp_1_2 Feature: gene Location: 8637-9626 bp Ori: EFW56744.1 Feature: domain Description: HTH_23 Location: 8676-8814 bp Feature: domain Description: HTH_2 3 Location: 8676-8814 bp Feature: domain Description: HTH_33 Location: 8919-9066 bp Feature: domain Description: HTH_33 Location: 8919-9066 bp Feature: domain Description: DDE_3 Location: 9123-9543 bp Feature: domain Description: DDE_3 Location: 912 3-9543 bp Feature: gene Location: 10208-10480 bp Ori: EFW56745.1 Feature: domain Description: InsE Location: 10211-10337 bp Feature: domain Description: InsE Location: 102 11-10337 bp Feature: gene Location: 10574-10888 bp Ori: EFW56746.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10577-10862 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10577-10862 bp Feature: gene Location: 10991-11194 bp Ori: EFW56747.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11099-11189 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11099-11189 bp Feature: gene Location: 11286-12002 bp Ori: EFW56748.1 Feature: domain Description: DDE_Tnp_1 Location: 11292-11934 bp Feature: domain Description: DDE_Tnp_1 Location: 112 92 -11934 bp Feature: gene Location: 12013-12528 bp Ori: EFW56749.1 Feature: domain Description: DDE_Tnp_1_2 Location: 12247-12505 bp Feature: domain Description: DDE_Tnp_1_2 Location: 12 2 47-12 505 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_23 (pfam13384), HTH_33 (pfam13592), DDE_3 (pfam13358), InsE (COG2963), RVT-GII, DDE_Tnp_1 (pfam01609), DDE_Tnp_1_2 (pfam13586)