myRT

myRT report for GCA_000194155.1_ASM19415v1

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Seq: GL877878.1 Saccharopolyspora spinosa NRRL 18395 genomic scaffold Scaffold000001, whole genome shotgun sequence (3851573 bp)
Overview 1 RT 1: 791220-796466 bp 2 RT 2: 833453-838581 bp 3 RT 3: 1737780-1745730 bp 4 RT 4: 3493234-3496784 bp Neighborhood of RT #1 [791220, 796570] Peptidase_C39_2 RVT-GII RVT-GII GIIM COG5659 HTH_32 rve_3 Neighborhood of RT #2 [833453, 838581] zf-ISL3 RVT-GII GIIM Neighborhood of RT #3 [1737780, 1746260] M20_Acy1-like Penicil_amidase RVT-GII GIIM DDE_Tnp_4 LysR Neighborhood of RT #4 [3493234, 3496784] GIY-YIG_unchar_1 RsdA_SigD_bd RVT-GII Feature: gene Location: 791220-792185 bp Feature: domain Description: Peptidase_C39_2 Location: 791685-792105 bp Feature: domain Description: Peptidase_C39_2 Location: 791 685-7921 05 bp Feature: gene Location: 792247-792474 bp Feature: gene Location: 793711-794727 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 793720-794062 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 793720-794062 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 794065-794341 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 794065-794341 bp Feature: domain Description: GIIM Note: maturase Location: 794422-794653 bp Feature: domain Description: GIIM Note: maturase Location: 794422-794653 bp Feature: gene Location: 794816-795157 bp Feature: domain Description: COG5659 Location: 794882-795140 bp Feature: domain Description: COG5659 Location: 794882-7951 40 bp Feature: gene Location: 795485-796570 bp Feature: domain Description: HTH_32 Location: 795740-795938 bp Feature: domain Description: HTH_32 Location: 795740-795938 bp Feature: domain Description: rve_3 Location: 796274-796466 bp Feature: domain Description: rve_3 Location: 796274-796466 bp Feature: gene Location: 833453-833980 bp Feature: gene Location: 834136-834759 bp Feature: domain Description: zf-ISL3 Location: 834241-834370 bp Feature: domain Description: zf-ISL3 Location: 834241 -834370 bp Feature: gene Location: 835636-836778 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 835669-836344 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 835669-836344 bp Feature: domain Description: GIIM Note: maturase Location: 836413-836623 bp Feature: domain Description: GIIM Note: maturase Location: 83641 3-836623 bp Feature: gene Location: 837151-837633 bp Feature: gene Location: 838186-838581 bp Feature: gene Location: 1737780-1739036 bp Feature: domain Description: M20_Acy1-like Location: 1737831-1739025 bp Feature: domain Description: M20_Acy1 -like Location: 1 737831 -1 739025 bp Feature: gene Location: 1739171-1742008 bp Feature: domain Description: Penicil_amidase Location: 1739531-1741967 bp Feature: domain Description: Penicil_amidase Location: 1 739531 -1 741 967 bp Feature: gene Location: 1742315-1743565 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1742531-1743182 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 742531 -1 7431 82 bp Feature: domain Description: GIIM Note: maturase Location: 1743275-1743500 bp Feature: domain Description: GIIM Note: maturase Location: 1 743275-1 743500 bp Feature: gene Location: 1744748-1745149 bp Feature: domain Description: DDE_Tnp_4 Location: 1744754-1745123 bp Feature: domain Description: DDE_Tnp_4 Location: 1 744754-1 7451 23 bp Feature: gene Location: 1745211-1746260 bp Feature: domain Description: LysR Location: 1745277-1745730 bp Feature: domain Description: LysR Location: 1 745277-1 745730 bp Feature: gene Location: 3493234-3493491 bp Feature: domain Description: GIY-YIG_unchar_1 Location: 3493240-3493489 bp Feature: domain Description: GIY-YIG_unchar_1 Location: 3493240-3493489 bp Feature: gene Location: 3494796-3495632 bp Feature: domain Description: RsdA_SigD_bd Location: 3495018-3495159 bp Feature: domain Description: RsdA_SigD_bd Location: 349501 8-34951 59 bp Feature: gene Location: 3495687-3496190 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3495789-3496185 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3495789-34961 85 bp Feature: gene Location: 3495765-3496541 bp Feature: gene Location: 3496632-3496784 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Peptidase_C39_2 (pfam13529), RVT-GII, GIIM (pfam08388), COG5659 (SRSO17 transposase ), HTH_32 (pfam13565), rve_3 (pfam13683), zf-ISL3 (pfam14690), M20_Acy1-like (cd08660), Penicil_amidase (pfam01804), DDE_Tnp_4 (pfam13359)
LysR (COG0583), GIY-YIG_unchar_1 (cd10446), RsdA_SigD_bd (pfam16751)

Seq: GL877879.1 Saccharopolyspora spinosa NRRL 18395 genomic scaffold Scaffold000002, whole genome shotgun sequence (2392754 bp)
Overview 1 RT 1: 951464-957922 bp 2 RT 2: 1563234-1570561 bp 3 RT 3: 1706733-1713873 bp Neighborhood of RT #1 [951464, 957936] COG3547 Sialidase_non-viral RVT-GII eno PRK02186 Neighborhood of RT #2 [1563234, 1570561] YHI9 PHZA_PHZB RVT-GII GIIM RVT-GII Intron_maturas2 DDE_Tnp_4 Neighborhood of RT #3 [1706733, 1713873] ALDH_KGSADH HTH_32 HTH_32 DDE_3 RVT_N RVT-GII GIIM Feature: gene Location: 951464-952384 bp Feature: domain Description: COG3547 Location: 951626-952337 bp Feature: domain Description: COG3547 Location: 95162 6-952 337 bp Feature: gene Location: 953101-953580 bp Feature: domain Description: Sialidase_non-viral Location: 953143-953314 bp Feature: domain Description: Sialidase_non-viral Location: 953143-953314 bp Feature: gene Location: 953899-954336 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 954028-954214 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 95402 8-9542 14 bp Feature: gene Location: 955259-956542 bp Feature: domain Description: eno Location: 955262-956525 bp Feature: domain Description: eno Location: 9552 62 -95652 5 bp Feature: gene Location: 956671-957936 bp Feature: domain Description: PRK02186 Location: 956929-957922 bp Feature: domain Description: PRK02 186 Location: 95692 9-95792 2 bp Feature: gene Location: 1563234-1564076 bp Feature: domain Description: YHI9 Location: 1563249-1564071 bp Feature: domain Description: YHI9 Location: 15632 49-1564071 bp Feature: gene Location: 1564093-1564593 bp Feature: domain Description: PHZA_PHZB Location: 1564126-1564588 bp Feature: domain Description: PHZA_PHZB Location: 156412 6-1564588 bp Feature: gene Location: 1564845-1566563 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1565109-1565805 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1565109-1565805 bp Feature: domain Description: GIIM Note: maturase Location: 1565877-1566063 bp Feature: domain Description: GIIM Note: maturase Location: 1565877-1566063 bp Feature: gene Location: 1566599-1568179 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1566677-1567472 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1566677-1567472 bp Feature: domain Description: Intron_maturas2 Location: 1567568-1567802 bp Feature: domain Description: Intron_maturas2 Location: 1567568-1567802 bp Feature: gene Location: 1568424-1569248 bp Feature: domain Description: DDE_Tnp_4 Location: 1568745-1569219 bp Feature: domain Description: DDE_Tnp_4 Location: 1568745-15692 19 bp Feature: gene Location: 1570175-1570561 bp Feature: gene Location: 1706733-1708196 bp Feature: domain Description: ALDH_KGSADH Location: 1706787-1708116 bp Feature: domain Description: ALDH_KGSADH Location: 1706787-1708116 bp Feature: gene Location: 1708386-1709396 bp Feature: domain Description: HTH_32 Location: 1708392-1708545 bp Feature: domain Description: HTH_32 Location: 1708392 -1708545 bp Feature: domain Description: HTH_32 Location: 1708638-1708851 bp Feature: domain Description: HTH_32 Location: 1708638-1708851 bp Feature: domain Description: DDE_3 Location: 1708974-1709340 bp Feature: domain Description: DDE_3 Location: 1708974-1709340 bp Feature: gene Location: 1710018-1711796 bp Feature: domain Description: RVT_N Location: 1710096-1710333 bp Feature: domain Description: RVT_N Location: 1710096-1710333 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1710393-1711050 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1710393-1711050 bp Feature: domain Description: GIIM Note: maturase Location: 1711110-1711341 bp Feature: domain Description: GIIM Note: maturase Location: 1711110-1711341 bp Feature: gene Location: 1712516-1712767 bp Feature: gene Location: 1713154-1713873 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), Sialidase_non-viral (cd15482), RVT-GII, eno (TIGR01060), PRK02186 (argininosuccinate lyase; Provisional), YHI9 (COG0384), PHZA_PHZB (pfam03284), GIIM (pfam08388), Intron_maturas2 (pfam01348), DDE_Tnp_4 (pfam13359)
ALDH_KGSADH (cd07129), HTH_32 (pfam13565), DDE_3 (pfam13358), RVT_N (pfam13655)

Seq: GL877881.1 Saccharopolyspora spinosa NRRL 18395 genomic scaffold Scaffold000004, whole genome shotgun sequence (524915 bp)
Overview 1 RT 1: 170443-174976 bp Neighborhood of RT #1 [170443, 174976] HTH_32 group_II_RT_mat RVT-GII Feature: gene Location: 170443-170946 bp Feature: domain Description: HTH_32 Location: 170581-170734 bp Feature: domain Description: HTH_3 2 Location: 170581-17073 4 bp Feature: gene Location: 171634-172089 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 171814-172021 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 171814-172021 bp Feature: gene Location: 172257-173747 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 172665-173355 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 172665-173 3 55 bp Feature: gene Location: 173749-174093 bp Feature: gene Location: 174521-174976 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_32 (pfam13565), group_II_RT_mat (TIGR04416), RVT-GII

Seq: GL877892.1 Saccharopolyspora spinosa NRRL 18395 genomic scaffold Scaffold000015, whole genome shotgun sequence (3234 bp)
Overview 1 RT 1: 313-3093 bp Neighborhood of RT #1 [313, 3233] RVT-GII GIIM Feature: gene Location: 313-1779 bp Feature: gene Location: 1802-2305 bp Feature: gene Location: 2625-3233 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2631-2799 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2631-2799 bp Feature: domain Description: GIIM Note: maturase Location: 2868-3093 bp Feature: domain Description: GIIM Note: maturase Location: 2868-3093 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)