myRT

myRT report for GCA_000194665.2_ASM19466v2

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Seq: AFAF02000002.1 Escherichia coli 3003 Contig589079650, whole genome shotgun sequence (2711297 bp)
Overview 1 RT 1: 598175-602153 bp Neighborhood of RT #1 [598175, 603055] RVT-Retrons Phage_GPA Feature: gene Location: 598175-598369 bp Feature: gene Location: 598368-598805 bp Feature: gene Location: 598930-599880 bp Ori: EII87606.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 599110-599653 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 5991 1 0-599653 bp Feature: gene Location: 600203-600358 bp Feature: gene Location: 600767-603055 bp Ori: EII86406.1 Feature: domain Description: Phage_GPA Location: 601166-602153 bp Feature: domain Description: Phage_GPA Location: 601 1 66-6021 53 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, Phage_GPA (pfam05840)

Seq: AFAF02000005.1 Escherichia coli 3003 ctg1125870511198, whole genome shotgun sequence (929166 bp)
Overview 1 RT 1: 432803-437323 bp Neighborhood of RT #1 [432803, 437376] COG3950 RVT-Retrons InsE PHA02517 Feature: gene Location: 432803-432955 bp Feature: gene Location: 433456-435108 bp Ori: EII85450.1 Feature: domain Description: COG3950 Location: 433654-435073 bp Feature: domain Description: COG3950 Location: 433654-435073 bp Feature: gene Location: 435105-436040 bp Ori: EII85595.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 435207-435807 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4352 07-435807 bp Feature: gene Location: 436454-436756 bp Ori: EII85710.1 Feature: domain Description: InsE Location: 436463-436745 bp Feature: domain Description: InsE Location: 436463-436745 bp Feature: gene Location: 436783-437376 bp Ori: EII85708.1 Feature: domain Description: PHA02517 Location: 436807-437323 bp Feature: domain Description: PHA02 517 Location: 436807-43732 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3950 (Predicted ATP-binding protein involved in virulence ), RVT-Retrons, InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed)

Seq: AFAF02000003.1 Escherichia coli 3003 ctg1125870511197, whole genome shotgun sequence (75160 bp)
Overview 1 RT 1: 56108-61818 bp Neighborhood of RT #1 [56108, 61841] COG4584 RVT-UG16 PRK13889 TraD Feature: gene Location: 56108-57130 bp Ori: EII86064.1 Feature: domain Description: COG4584 Location: 56111-56981 bp Feature: domain Description: COG4584 Location: 56111-56981 bp Feature: gene Location: 57267-57683 bp Feature: gene Location: 57783-59267 bp Ori: EII86096.1 Feature: RT Description: RVT-UG16 Note: UG16 RT Location: 58146-58554 bp Feature: RT Description: RVT-UG16 Note: UG16 RT Location: 58146-58554 bp Feature: gene Location: 59400-60896 bp Ori: EII86114.1 Feature: domain Description: PRK13889 Location: 59403-60006 bp Feature: domain Description: PRK13 889 Location: 59403 -60006 bp Feature: gene Location: 61536-61841 bp Ori: EII86095.1 Feature: domain Description: TraD Location: 61644-61818 bp Feature: domain Description: TraD Location: 61644-61818 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4584 (Transposase ), RVT-UG16, PRK13889 (conjugal transfer relaxase TraA; Provisional), TraD (pfam06412)

Seq: AFAF02000004.1 Escherichia coli 3003 ctg1125870511199, whole genome shotgun sequence (321889 bp)
Overview 1 RT 1: 189499-195485 bp Neighborhood of RT #1 [189499, 195490] P Q RVT-Retrons DinI Feature: gene Location: 189499-191265 bp Ori: EII86004.1 Feature: domain Description: P Location: 189526-191260 bp Feature: domain Description: P Location: 189526-191260 bp Feature: gene Location: 191265-192290 bp Ori: EII85883.1 Feature: domain Description: Q Location: 191268-192285 bp Feature: domain Description: Q Location: 191268-192285 bp Feature: gene Location: 192332-194272 bp Ori: EII85821.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 192656-193280 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 192656-193280 bp Feature: gene Location: 194305-194466 bp Feature: gene Location: 195257-195490 bp Ori: EII86044.1 Feature: domain Description: DinI Location: 195299-195485 bp Feature: domain Description: DinI Location: 195299-1954 85 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT P (PHA02535), Q (PHA02536), RVT-Retrons, DinI (pfam06183)