myRT

myRT report for GCA_000205025.1_ASM20502v1

Download annotations/find similar RTs

Seq: GL883678.1 Parasutterella excrementihominis YIT 11859 genomic scaffold Scfld4, whole genome shotgun sequence (1906 bp)
Overview 1 RT 1: 80-1247 bp Neighborhood of RT #1 [80, 1411] RVT-GII GIIM Feature: gene Location: 80-1411 bp Ori: EGG57446.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 302-929 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 302-929 bp Feature: domain Description: GIIM Note: maturase Location: 1016-1247 bp Feature: domain Description: GIIM Note: maturase Location: 1 01 6-1 247 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: GL883762.1 Parasutterella excrementihominis YIT 11859 genomic scaffold Scfld408, whole genome shotgun sequence (28022 bp)
Overview 1 RT 1: 22780-27666 bp Neighborhood of RT #1 [22780, 27824] PRK10787 HU RVT-GII GIIM Feature: gene Location: 22780-25167 bp Ori: EGG50433.1 Feature: domain Description: PRK10787 Location: 22789-25084 bp Feature: domain Description: PRK10787 Location: 2 2 789-2 5084 bp Feature: gene Location: 25513-25788 bp Ori: EGG50434.1 Feature: domain Description: HU Location: 25522-25777 bp Feature: domain Description: HU Location: 2 552 2 -2 5777 bp Feature: gene Location: 26433-27824 bp Ori: EGG50435.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26760-27384 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 6760-2 7384 bp Feature: domain Description: GIIM Note: maturase Location: 27447-27666 bp Feature: domain Description: GIIM Note: maturase Location: 2 7447-2 7666 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10787 (DNA-binding ATP-dependent protease La; Provisional), HU (cd13831), RVT-GII, GIIM (pfam08388)

Seq: GL883707.1 Parasutterella excrementihominis YIT 11859 genomic scaffold Scfld48, whole genome shotgun sequence (88895 bp)
Overview 1 RT 1: 70058-77819 bp Neighborhood of RT #1 [70058, 78097] Autotransporter RVT-GII GIIM RVT-GII FdnI FDH-N Feature: gene Location: 70058-73852 bp Ori: EGG54788.1 Feature: domain Description: Autotransporter Location: 73157-73541 bp Feature: domain Description: Autotransporter Location: 73 157-73 541 bp Feature: gene Location: 74213-74482 bp Feature: gene Location: 74724-75296 bp Ori: EGG54790.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 74727-75057 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 74727-75057 bp Feature: domain Description: GIIM Note: maturase Location: 75114-75288 bp Feature: domain Description: GIIM Note: maturase Location: 75114-75288 bp Feature: gene Location: 75383-75646 bp Ori: EGG54791.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 75443-75557 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 75443 -75557 bp Feature: gene Location: 76407-77165 bp Ori: EGG54792.1 Feature: domain Description: FdnI Location: 76419-77082 bp Feature: domain Description: FdnI Location: 76419-77082 bp Feature: gene Location: 77177-78097 bp Ori: EGG54793.1 Feature: domain Description: FDH-N Location: 77207-77819 bp Feature: domain Description: FDH-N Location: 77207-77819 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Autotransporter (smart00869), RVT-GII, GIIM (pfam08388), FdnI (COG2864), FDH-N (cd10558)

Seq: GL883764.1 Parasutterella excrementihominis YIT 11859 genomic scaffold Scfld489, whole genome shotgun sequence (41250 bp)
Overview 1 RT 1: 19967-26317 bp Neighborhood of RT #1 [19967, 26448] AAA_15 TOPRIM_OLD DEXQc_UvrD DEXQc_UvrD UvrD RVT-Retrons COG3950 COG3950 TIGR02646 Feature: gene Location: 19967-21616 bp Ori: EGG50109.1 Feature: domain Description: AAA_15 Location: 19976-20909 bp Feature: domain Description: AAA_15 Location: 19976-20909 bp Feature: domain Description: TOPRIM_OLD Location: 21032-21266 bp Feature: domain Description: TOPRIM_OLD Location: 21032-21266 bp Feature: gene Location: 21609-23126 bp Ori: EGG50110.1 Feature: domain Description: DEXQc_UvrD Location: 21642-21861 bp Feature: domain Description: DEXQc_UvrD Location: 2164 2-21861 bp Feature: domain Description: DEXQc_UvrD Location: 21897-22110 bp Feature: domain Description: DEXQc_UvrD Location: 21897-22110 bp Feature: domain Description: UvrD Location: 22587-23085 bp Feature: domain Description: UvrD Location: 22587-23085 bp Feature: gene Location: 23516-24424 bp Ori: EGG50111.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 23600-24191 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 23600-24 191 bp Feature: gene Location: 24426-25796 bp Ori: EGG50112.1 Feature: domain Description: COG3950 Location: 24561-25020 bp Feature: domain Description: COG3950 Location: 24 561-25020 bp Feature: domain Description: COG3950 Location: 25332-25710 bp Feature: domain Description: COG3950 Location: 25332-25710 bp Feature: gene Location: 25798-26448 bp Ori: EGG50113.1 Feature: domain Description: TIGR02646 Location: 25879-26317 bp Feature: domain Description: TIGR0264 6 Location: 25879-26317 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_15 (pfam13175), TOPRIM_OLD (cd01026), DEXQc_UvrD (cd17932), UvrD (COG0210), RVT-Retrons, COG3950 (Predicted ATP-binding protein involved in virulence ), TIGR02646 (TIGR02646 family protein)