myRT

myRT report for GCA_000208565.2_ASM20856v2

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Seq: AEME01000001.1 Escherichia sp. TW09308 contig_001, whole genome shotgun sequence (4809826 bp)
Overview 1 RT 1: 1973283-1978548 bp 2 RT 2: 3970394-3976693 bp 3 RT 3: 4195728-4208632 bp Neighborhood of RT #1 [1973283, 1978556] RVT-GII RVT-GII GIIM aconitase_1 ribA Neighborhood of RT #2 [3970394, 3976698] RVT-Retrons Q P Neighborhood of RT #3 [4195728, 4208637] type_I_sec_TolC Big_6 Ig_like_ice Ig_like_ice Ig_like_ice Ig_like_ice Ig_like_ice Ig_like_ice Ig_like_ice Ig_like_ice Ig_like_ice Ig_like_ice Ig_like_ice Ig_like_ice Ig_like_ice Ig_like_ice Ig_like_ice Ig_like_ice Ig_like_ice Ig_like_ice Ig_like_ice Ig_like_ice Ig_like_ice Ig_like_ice Ig_like_ice Ig_like_ice Ig_like_ice Ig_like_ice Ig_like_ice RVT-Retrons PRK09692 Feature: gene Location: 1973283-1973477 bp Feature: gene Location: 1973585-1973806 bp Feature: gene Location: 1973896-1974102 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1973905-1974097 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 973905-1 974097 bp Feature: gene Location: 1974103-1974936 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1974106-1974523 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 9741 06-1 974523 bp Feature: domain Description: GIIM Note: maturase Location: 1974571-1974790 bp Feature: domain Description: GIIM Note: maturase Location: 1 974571 -1 974790 bp Feature: gene Location: 1975164-1977839 bp Feature: domain Description: aconitase_1 Location: 1975218-1977834 bp Feature: domain Description: aconitase_1 Location: 1 97521 8-1 977834 bp Feature: gene Location: 1977903-1978556 bp Feature: domain Description: ribA Location: 1977978-1978548 bp Feature: domain Description: ribA Location: 1 977978-1 978548 bp Feature: gene Location: 3970394-3971452 bp Feature: gene Location: 3971924-3972097 bp Feature: gene Location: 3972105-3973865 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3972249-3972873 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3972249-3972873 bp Feature: gene Location: 3973907-3974932 bp Feature: domain Description: Q Location: 3973913-3974927 bp Feature: domain Description: Q Location: 397391 3-3974927 bp Feature: gene Location: 3974932-3976698 bp Feature: domain Description: P Location: 3974959-3976693 bp Feature: domain Description: P Location: 3974959-3976693 bp Feature: gene Location: 4195728-4196150 bp Feature: domain Description: type_I_sec_TolC Location: 4195734-4196127 bp Feature: domain Description: type_I_sec_TolC Location: 41 95734-41 961 27 bp Feature: gene Location: 4196346-4205132 bp Feature: domain Description: Big_6 Location: 4196928-4197102 bp Feature: domain Description: Big_6 Location: 41 96928-41 971 02 bp Feature: domain Description: Ig_like_ice Location: 4197108-4197357 bp Feature: domain Description: Ig_like_ice Location: 41 971 08-41 97357 bp Feature: domain Description: Ig_like_ice Location: 4197396-4197654 bp Feature: domain Description: Ig_like_ice Location: 41 97396-41 97654 bp Feature: domain Description: Ig_like_ice Location: 4197699-4197945 bp Feature: domain Description: Ig_like_ice Location: 41 97699-41 97945 bp Feature: domain Description: Ig_like_ice Location: 4197993-4198260 bp Feature: domain Description: Ig_like_ice Location: 41 97993-41 98260 bp Feature: domain Description: Ig_like_ice Location: 4198293-4198557 bp Feature: domain Description: Ig_like_ice Location: 41 98293-41 98557 bp Feature: domain Description: Ig_like_ice Location: 4198608-4198857 bp Feature: domain Description: Ig_like_ice Location: 41 98608-41 98857 bp Feature: domain Description: Ig_like_ice Location: 4198893-4199181 bp Feature: domain Description: Ig_like_ice Location: 41 98893-41 991 81 bp Feature: domain Description: Ig_like_ice Location: 4199190-4199448 bp Feature: domain Description: Ig_like_ice Location: 41 991 90-41 99448 bp Feature: domain Description: Ig_like_ice Location: 4199490-4199742 bp Feature: domain Description: Ig_like_ice Location: 41 99490-41 99742 bp Feature: domain Description: Ig_like_ice Location: 4199784-4200048 bp Feature: domain Description: Ig_like_ice Location: 41 99784-4200048 bp Feature: domain Description: Ig_like_ice Location: 4200102-4200351 bp Feature: domain Description: Ig_like_ice Location: 42001 02-4200351 bp Feature: domain Description: Ig_like_ice Location: 4200396-4200645 bp Feature: domain Description: Ig_like_ice Location: 4200396-4200645 bp Feature: domain Description: Ig_like_ice Location: 4200684-4200951 bp Feature: domain Description: Ig_like_ice Location: 4200684-4200951 bp Feature: domain Description: Ig_like_ice Location: 4200999-4201257 bp Feature: domain Description: Ig_like_ice Location: 4200999-4201 257 bp Feature: domain Description: Ig_like_ice Location: 4201290-4201551 bp Feature: domain Description: Ig_like_ice Location: 4201 290-4201 551 bp Feature: domain Description: Ig_like_ice Location: 4201593-4201842 bp Feature: domain Description: Ig_like_ice Location: 4201 593-4201 842 bp Feature: domain Description: Ig_like_ice Location: 4201890-4202154 bp Feature: domain Description: Ig_like_ice Location: 4201 890-42021 54 bp Feature: domain Description: Ig_like_ice Location: 4202193-4202448 bp Feature: domain Description: Ig_like_ice Location: 42021 93-4202448 bp Feature: domain Description: Ig_like_ice Location: 4202490-4202754 bp Feature: domain Description: Ig_like_ice Location: 4202490-4202754 bp Feature: domain Description: Ig_like_ice Location: 4202799-4203051 bp Feature: domain Description: Ig_like_ice Location: 4202799-4203051 bp Feature: domain Description: Ig_like_ice Location: 4203087-4203345 bp Feature: domain Description: Ig_like_ice Location: 4203087-4203345 bp Feature: domain Description: Ig_like_ice Location: 4203384-4203645 bp Feature: domain Description: Ig_like_ice Location: 4203384-4203645 bp Feature: domain Description: Ig_like_ice Location: 4203684-4203948 bp Feature: domain Description: Ig_like_ice Location: 4203684-4203948 bp Feature: domain Description: Ig_like_ice Location: 4203996-4204248 bp Feature: domain Description: Ig_like_ice Location: 4203996-4204248 bp Feature: domain Description: Ig_like_ice Location: 4204281-4204548 bp Feature: domain Description: Ig_like_ice Location: 4204281 -4204548 bp Feature: domain Description: Ig_like_ice Location: 4204593-4204842 bp Feature: domain Description: Ig_like_ice Location: 4204593-4204842 bp Feature: domain Description: Ig_like_ice Location: 4204878-4205106 bp Feature: domain Description: Ig_like_ice Location: 4204878-42051 06 bp Feature: gene Location: 4205135-4206604 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4205846-4206401 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4205846-4206401 bp Feature: gene Location: 4206606-4207283 bp Feature: gene Location: 4207471-4208637 bp Feature: domain Description: PRK09692 Location: 4207480-4208632 bp Feature: domain Description: PRK09692 Location: 4207480-4208632 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), aconitase_1 (TIGR01341), ribA (TIGR00505), RVT-Retrons, Q (PHA02536), P (PHA02535), type_I_sec_TolC (TIGR01844), Big_6 (pfam17936), Ig_like_ice (NF012196)
PRK09692 (Integrase; provisional)