myRT

myRT report for GCA_000208725.1_ASM20872v1

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Seq: CABY01000008.1 Streptococcus equi subsp. zooepidemicus BHS5, whole genome shotgun sequence, strain BHS5, scaffold08 (128390 bp)
Overview 1 RT 1: 32071-37410 bp 2 RT 2: 49027-58623 bp 3 RT 3: 67783-72589 bp Neighborhood of RT #1 [32071, 37478] RloB AAA_21 AAA_21 RVT-GII Intron_maturas2 Relaxase MobC Neighborhood of RT #2 [49027, 58623] KOG1000 RVT-GII Intron_maturas2 HNHc N6_Mtase COG4646 Neighborhood of RT #3 [67783, 72672] TraC-F-type TraC-F-type RVT_N RVT-GII GIIM TraC-F-type PrgI Feature: gene Location: 32071-32706 bp Feature: domain Description: RloB Location: 32134-32674 bp Feature: domain Description: RloB Location: 321 34-32674 bp Feature: gene Location: 32713-33813 bp Feature: domain Description: AAA_21 Location: 32743-32911 bp Feature: domain Description: AAA_21 Location: 32743-3291 1 bp Feature: domain Description: AAA_21 Location: 33112-33598 bp Feature: domain Description: AAA_21 Location: 331 1 2-33598 bp Feature: gene Location: 34440-36161 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34716-35520 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3471 6-35520 bp Feature: domain Description: Intron_maturas2 Location: 35628-35907 bp Feature: domain Description: Intron_maturas2 Location: 35628-35907 bp Feature: gene Location: 36698-37126 bp Feature: domain Description: Relaxase Location: 36731-37091 bp Feature: domain Description: Relaxase Location: 36731 -37091 bp Feature: gene Location: 37113-37478 bp Feature: domain Description: MobC Location: 37299-37410 bp Feature: domain Description: MobC Location: 37299-3741 0 bp Feature: gene Location: 49027-49326 bp Feature: gene Location: 49396-50739 bp Feature: domain Description: KOG1000 Location: 49675-49990 bp Feature: domain Description: KOG1 000 Location: 49675-49990 bp Feature: gene Location: 50877-52655 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51138-51930 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51 1 38-51 930 bp Feature: domain Description: Intron_maturas2 Location: 52035-52266 bp Feature: domain Description: Intron_maturas2 Location: 52035-52266 bp Feature: domain Description: HNHc Note: nucleases Location: 52431-52617 bp Feature: domain Description: HNHc Note: nucleases Location: 52431 -5261 7 bp Feature: gene Location: 53153-58237 bp Feature: domain Description: N6_Mtase Location: 54770-55361 bp Feature: domain Description: N6_Mtase Location: 54770-55361 bp Feature: domain Description: COG4646 Location: 55952-58082 bp Feature: domain Description: COG4646 Location: 55952-58082 bp Feature: gene Location: 58279-58623 bp Feature: gene Location: 67783-68193 bp Feature: domain Description: TraC-F-type Location: 67840-68014 bp Feature: domain Description: TraC-F-type Location: 67840-6801 4 bp Feature: gene Location: 68138-68752 bp Feature: domain Description: TraC-F-type Location: 68231-68732 bp Feature: domain Description: TraC-F-type Location: 68231 -68732 bp Feature: gene Location: 68757-70454 bp Feature: RT Description: RVT_N Location: 68853-69093 bp Feature: RT Description: RVT_N Location: 68853-69093 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 69141-69801 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 691 41 -69801 bp Feature: domain Description: GIIM Note: maturase Location: 69870-70089 bp Feature: domain Description: GIIM Note: maturase Location: 69870-70089 bp Feature: gene Location: 70959-72446 bp Feature: domain Description: TraC-F-type Location: 71280-72132 bp Feature: domain Description: TraC-F-type Location: 71 280-721 32 bp Feature: gene Location: 72403-72672 bp Feature: domain Description: PrgI Location: 72415-72589 bp Feature: domain Description: PrgI Location: 7241 5-72589 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RloB (pfam13707), AAA_21 (pfam13304), RVT-GII, Intron_maturas2 (pfam01348), Relaxase (pfam03432), MobC (pfam05713), KOG1000 (KOG1000, Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily ), HNHc (smart00507), N6_Mtase (pfam02384), COG4646 (Adenine-specific DNA methylase, N12 class )
TraC-F-type (TIGR02746), RVT_N (pfam13655), GIIM (pfam08388), PrgI (pfam12666)