myRT

myRT report for GCA_000209405.1_Lach_bact_3_1_46FAA_V1

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Seq: GL890522.1 Lachnospiraceae bacterium 3_1_46FAA genomic scaffold supercont1.3, whole genome shotgun sequence (377765 bp)
Overview 1 RT 1: 76369-84767 bp 2 RT 2: 222052-224715 bp Neighborhood of RT #1 [76369, 84769] PLPDE_III_DapDC LytD RVT-GII Gph PRK05755 Neighborhood of RT #2 [222052, 224732] Phage_XkdX RVT-DGRs Phage_holin_5_2 Feature: gene Location: 76369-77643 bp Feature: domain Description: PLPDE_III_DapDC Location: 76426-77536 bp Feature: domain Description: PLPDE_III_DapDC Location: 76426-77536 bp Feature: gene Location: 78398-80260 bp Feature: domain Description: LytD Location: 79055-79574 bp Feature: domain Description: LytD Location: 79055-79574 bp Feature: gene Location: 80803-81258 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81013-81133 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81 01 3-81 1 33 bp Feature: gene Location: 81420-82034 bp Feature: domain Description: Gph Location: 81423-82023 bp Feature: domain Description: Gph Location: 81 423-82023 bp Feature: gene Location: 82154-84769 bp Feature: domain Description: PRK05755 Location: 82163-84767 bp Feature: domain Description: PRK05755 Location: 821 63-84767 bp Feature: gene Location: 222052-222195 bp Feature: domain Description: Phage_XkdX Location: 222073-222190 bp Feature: domain Description: Phage_XkdX Location: 222073-2221 90 bp Feature: gene Location: 222192-222677 bp Feature: gene Location: 222888-224084 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 223077-223896 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 223077-223896 bp Feature: gene Location: 224103-224426 bp Feature: gene Location: 224439-224732 bp Feature: domain Description: Phage_holin_5_2 Location: 224484-224715 bp Feature: domain Description: Phage_holin_5_2 Location: 224484-22471 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PLPDE_III_DapDC (cd06828), LytD (COG4193), RVT-GII, Gph (COG0546), PRK05755 (DNA polymerase I; Provisional), Phage_XkdX (pfam09693), RVT-DGRs, Phage_holin_5_2 (pfam16079)

Seq: GL890521.1 Lachnospiraceae bacterium 3_1_46FAA genomic scaffold supercont1.2, whole genome shotgun sequence (919149 bp)
Overview 1 RT 1: 476808-479401 bp 2 RT 2: 672688-675524 bp Neighborhood of RT #1 [476808, 480741] RVT-DGRs DUF3751 Neighborhood of RT #2 [672688, 675524] RVT-DGRs Feature: gene Location: 476808-476915 bp Feature: gene Location: 476934-477146 bp Feature: gene Location: 477136-478413 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 477334-478168 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 477334-478168 bp Feature: gene Location: 478551-478757 bp Feature: gene Location: 478948-480741 bp Feature: domain Description: DUF3751 Location: 478969-479401 bp Feature: domain Description: DUF3751 Location: 478969-479401 bp Feature: gene Location: 672688-673380 bp Feature: gene Location: 673275-673532 bp Feature: gene Location: 673504-674703 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 673693-674437 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 673693-674437 bp Feature: gene Location: 674696-675067 bp Feature: gene Location: 675009-675524 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, DUF3751 (pfam12571)

Seq: GL890524.1 Lachnospiraceae bacterium 3_1_46FAA genomic scaffold supercont1.5, whole genome shotgun sequence (309298 bp)
Overview 1 RT 1: 284853-291563 bp Neighborhood of RT #1 [284853, 291563] Penicillinase_R Peptidase_M56 YbxI RVT-GII GIIM Feature: gene Location: 284853-285239 bp Feature: domain Description: Penicillinase_R Location: 284874-285213 bp Feature: domain Description: Penicillinase_R Location: 284874-285213 bp Feature: gene Location: 285241-287037 bp Feature: domain Description: Peptidase_M56 Location: 285277-286168 bp Feature: domain Description: Peptidase_M56 Location: 285277-286168 bp Feature: domain Description: YbxI Location: 286318-287029 bp Feature: domain Description: YbxI Location: 2863 18-287029 bp Feature: gene Location: 287113-288525 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 287464-288085 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 287464-288085 bp Feature: domain Description: GIIM Note: maturase Location: 288142-288358 bp Feature: domain Description: GIIM Note: maturase Location: 288142-2883 58 bp Feature: gene Location: 288973-290484 bp Feature: gene Location: 290541-291563 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Penicillinase_R (pfam03965), Peptidase_M56 (pfam05569), YbxI (COG2602), RVT-GII, GIIM (pfam08388)