myRT

myRT report for GCA_000210535.1_ASM21053v1

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Seq: FP929037.1 Clostridium saccharolyticum-like K10 draft genome (3769775 bp)
Overview 1 RT 1: 496474-500619 bp 2 RT 2: 1874154-1877859 bp 3 RT 3: 3046995-3051122 bp 4 RT 4: 3295251-3297445 bp 5 RT 5: 3316980-3323330 bp Neighborhood of RT #1 [496474, 500627] PrgI RVT-GII Intron_maturas2 HNHc Maff2 Neighborhood of RT #2 [1874154, 1877873] YjbM RVT-GII GIIM MalY MalY Neighborhood of RT #3 [3046995, 3051136] Cupin_2 RVT-Retrons PRK09772 Neighborhood of RT #4 [3295251, 3297445] RVT-Retrons Neighborhood of RT #5 [3316980, 3323371] SDF RVT-GII GIIM COG3666 DDE_Tnp_1_6 Feature: gene Location: 496474-496857 bp Feature: domain Description: PrgI Location: 496489-496762 bp Feature: domain Description: PrgI Location: 496489-496762 bp Feature: gene Location: 496880-497128 bp Feature: gene Location: 497258-499090 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 497522-498353 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 497522-498353 bp Feature: domain Description: Intron_maturas2 Location: 498425-498740 bp Feature: domain Description: Intron_maturas2 Location: 498425-498740 bp Feature: domain Description: HNHc Note: nucleases Location: 498890-499061 bp Feature: domain Description: HNHc Note: nucleases Location: 498890-499061 bp Feature: gene Location: 499667-500338 bp Feature: gene Location: 500409-500627 bp Feature: domain Description: Maff2 Location: 500412-500619 bp Feature: domain Description: Maff2 Location: 50041 2-50061 9 bp Feature: gene Location: 1874154-1874300 bp Feature: gene Location: 1874300-1875109 bp Feature: domain Description: YjbM Location: 1874459-1875077 bp Feature: domain Description: YjbM Location: 1 874459-1 875077 bp Feature: gene Location: 1876460-1877434 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1876466-1877054 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 876466-1 877054 bp Feature: domain Description: GIIM Note: maturase Location: 1877135-1877354 bp Feature: domain Description: GIIM Note: maturase Location: 1 8771 35-1 877354 bp Feature: gene Location: 1877694-1877873 bp Feature: domain Description: MalY Location: 1877697-1877784 bp Feature: domain Description: MalY Location: 1 877697-1 877784 bp Feature: domain Description: MalY Location: 1877805-1877859 bp Feature: domain Description: MalY Location: 1 877805-1 877859 bp Feature: gene Location: 3046995-3047561 bp Feature: gene Location: 3047663-3047989 bp Feature: domain Description: Cupin_2 Location: 3047771-3047972 bp Feature: domain Description: Cupin_2 Location: 3047771 -3047972 bp Feature: gene Location: 3048023-3049036 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3048188-3048743 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 30481 88-3048743 bp Feature: gene Location: 3049175-3049378 bp Feature: gene Location: 3050303-3051136 bp Feature: domain Description: PRK09772 Location: 3050312-3051122 bp Feature: domain Description: PRK09772 Location: 305031 2-3051 1 22 bp Feature: gene Location: 3295251-3296348 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3295374-3295950 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3295374-3295950 bp Feature: gene Location: 3296393-3296887 bp Feature: gene Location: 3297344-3297445 bp Feature: gene Location: 3316980-3317219 bp Feature: gene Location: 3317295-3318488 bp Feature: domain Description: SDF Location: 3317322-3318432 bp Feature: domain Description: SDF Location: 331 7322-331 8432 bp Feature: gene Location: 3319099-3320403 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3319399-3320020 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 331 9399-3320020 bp Feature: domain Description: GIIM Note: maturase Location: 3320092-3320314 bp Feature: domain Description: GIIM Note: maturase Location: 3320092-332031 4 bp Feature: gene Location: 3322244-3323371 bp Feature: domain Description: COG3666 Location: 3322247-3322430 bp Feature: domain Description: COG3666 Location: 3322247-3322430 bp Feature: domain Description: DDE_Tnp_1_6 Location: 3322979-3323330 bp Feature: domain Description: DDE_Tnp_1 _6 Location: 3322979-3323330 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PrgI (pfam12666), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), Maff2 (pfam12750), YjbM (COG2357), GIIM (pfam08388), MalY (COG1168), Cupin_2 (pfam07883), RVT-Retrons
PRK09772 (transcriptional antiterminator BglG; Provisional), SDF (pfam00375), COG3666 (Transposase ), DDE_Tnp_1_6 (pfam13751)