myRT

myRT report for GCA_000210575.1_ASM21057v1

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Seq: FP929032.1 Alistipes shahii WAL 8301 draft genome (3763317 bp)
Overview 1 RT 1: 168694-172853 bp 2 RT 2: 383510-387944 bp 3 RT 3: 1395122-1399702 bp 4 RT 4: 3170202-3176605 bp 5 RT 5: 3351179-3357855 bp Neighborhood of RT #1 [168694, 172853] Phage_holin_4_1 RVT-DGRs Neighborhood of RT #2 [383510, 387944] ParE_toxin RVT-GII Intron_maturas2 DUF4134 Neighborhood of RT #3 [1395122, 1399743] DUF4134 DUF4133 RVT_N RVT-GII GIIM DUF2958 Neighborhood of RT #4 [3170202, 3176607] TMAO_torS UGD_SDR_e RVT-GII Intron_maturas2 HNHc DUF2023 PRK09267 Neighborhood of RT #5 [3351179, 3358058] ZIP_Gal4-like_1 RVT-GII Intron_maturas2 HNHc BACON BACON BACON BACON Laminin_G_3 Feature: gene Location: 168694-169122 bp Feature: gene Location: 169106-169597 bp Feature: domain Description: Phage_holin_4_1 Location: 169157-169451 bp Feature: domain Description: Phage_holin_4_1 Location: 1 691 57-1 69451 bp Feature: gene Location: 169986-170996 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 170193-170859 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1 701 93-1 70859 bp Feature: gene Location: 171242-171607 bp Feature: gene Location: 171684-172853 bp Feature: gene Location: 383510-383743 bp Feature: gene Location: 384151-384453 bp Feature: domain Description: ParE_toxin Location: 384163-384430 bp Feature: domain Description: ParE_toxin Location: 3841 63-384430 bp Feature: gene Location: 384929-386641 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 385193-386015 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3851 93-38601 5 bp Feature: domain Description: Intron_maturas2 Location: 386090-386417 bp Feature: domain Description: Intron_maturas2 Location: 386090-38641 7 bp Feature: gene Location: 387259-387555 bp Feature: domain Description: DUF4134 Location: 387277-387550 bp Feature: domain Description: DUF41 34 Location: 387277-387550 bp Feature: gene Location: 387699-387944 bp Feature: gene Location: 1395122-1395346 bp Feature: domain Description: DUF4134 Location: 1395128-1395341 bp Feature: domain Description: DUF41 34 Location: 1 3951 28-1 395341 bp Feature: gene Location: 1395350-1395664 bp Feature: domain Description: DUF4133 Location: 1395368-1395635 bp Feature: domain Description: DUF41 33 Location: 1 395368-1 395635 bp Feature: gene Location: 1396576-1398258 bp Feature: RT Description: RVT_N Location: 1396639-1396882 bp Feature: RT Description: RVT_N Location: 1 396639-1 396882 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1396927-1397575 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 396927-1 397575 bp Feature: domain Description: GIIM Note: maturase Location: 1397626-1397860 bp Feature: domain Description: GIIM Note: maturase Location: 1 397626-1 397860 bp Feature: gene Location: 1398967-1399356 bp Feature: gene Location: 1399426-1399743 bp Feature: domain Description: DUF2958 Location: 1399435-1399702 bp Feature: domain Description: DUF2958 Location: 1 399435-1 399702 bp Feature: gene Location: 3170202-3171701 bp Feature: domain Description: TMAO_torS Location: 3170934-3171621 bp Feature: domain Description: TMAO_torS Location: 31 70934-31 71 621 bp Feature: gene Location: 3171700-3172692 bp Feature: domain Description: UGD_SDR_e Location: 3171772-3172660 bp Feature: domain Description: UGD_SDR_e Location: 31 71 772-31 72660 bp Feature: gene Location: 3173231-3174700 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3173237-3173978 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 73237-31 73978 bp Feature: domain Description: Intron_maturas2 Location: 3174119-3174353 bp Feature: domain Description: Intron_maturas2 Location: 31 741 1 9-31 74353 bp Feature: domain Description: HNHc Note: nucleases Location: 3174530-3174677 bp Feature: domain Description: HNHc Note: nucleases Location: 31 74530-31 74677 bp Feature: gene Location: 3175760-3176140 bp Feature: domain Description: DUF2023 Location: 3175799-3176099 bp Feature: domain Description: DUF2023 Location: 31 75799-31 76099 bp Feature: gene Location: 3176143-3176607 bp Feature: domain Description: PRK09267 Location: 3176146-3176605 bp Feature: domain Description: PRK09267 Location: 31 761 46-31 76605 bp Feature: gene Location: 3351179-3351373 bp Feature: gene Location: 3351464-3351598 bp Feature: domain Description: ZIP_Gal4-like_1 Location: 3351521-3351575 bp Feature: domain Description: ZIP_Gal4-like_1 Location: 3351 521 -3351 575 bp Feature: gene Location: 3352167-3353993 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3352452-3353274 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3352452-3353274 bp Feature: domain Description: Intron_maturas2 Location: 3353346-3353670 bp Feature: domain Description: Intron_maturas2 Location: 3353346-3353670 bp Feature: domain Description: HNHc Note: nucleases Location: 3353823-3353970 bp Feature: domain Description: HNHc Note: nucleases Location: 3353823-3353970 bp Feature: gene Location: 3354291-3354362 bp Feature: gene Location: 3356109-3358058 bp Feature: domain Description: BACON Location: 3356217-3356457 bp Feature: domain Description: BACON Location: 335621 7-3356457 bp Feature: domain Description: BACON Location: 3356529-3356733 bp Feature: domain Description: BACON Location: 3356529-3356733 bp Feature: domain Description: BACON Location: 3356772-3357045 bp Feature: domain Description: BACON Location: 3356772-3357045 bp Feature: domain Description: BACON Location: 3357087-3357324 bp Feature: domain Description: BACON Location: 3357087-3357324 bp Feature: domain Description: Laminin_G_3 Location: 3357417-3357855 bp Feature: domain Description: Laminin_G_3 Location: 335741 7-3357855 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_holin_4_1 (pfam05105), RVT-DGRs, ParE_toxin (pfam05016), RVT-GII, Intron_maturas2 (pfam01348), DUF4134 (pfam13572), DUF4133 (pfam13571), RVT_N (pfam13655), GIIM (pfam08388), DUF2958 (pfam11171)
TMAO_torS (TIGR02956), UGD_SDR_e (cd05230), HNHc (smart00507), DUF2023 (pfam09633), PRK09267 (flavodoxin FldA; Validated), ZIP_Gal4-like_1 (cd14724), BACON (pfam13004), Laminin_G_3 (pfam13385)