myRT

myRT report for GCA_000213595.1_ASM21359v1

Download annotations/find similar RTs

Seq: GL892032.1 Desmospora sp. 8437 genomic scaffold SCAFFOLD1, whole genome shotgun sequence (3676131 bp)
Overview 1 RT 1: 843376-848078 bp 2 RT 2: 2254849-2259742 bp Neighborhood of RT #1 [843376, 849475] L28 DUF572 RVT-Retrons SWIM HEAT_2 HEAT_2 Neighborhood of RT #2 [2254849, 2259744] nucleoid_noc BcsQ RVT-GII Intron_maturas2 nucleoid_noc Feature: gene Location: 843376-843564 bp Feature: domain Description: L28 Location: 843379-843544 bp Feature: domain Description: L28 Location: 843379-843544 bp Feature: gene Location: 843617-843907 bp Feature: gene Location: 844013-845126 bp Feature: domain Description: DUF572 Location: 844157-844379 bp Feature: domain Description: DUF572 Location: 8441 57-844379 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 844586-845084 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 844586-845084 bp Feature: gene Location: 845110-846792 bp Feature: domain Description: SWIM Location: 846619-846721 bp Feature: domain Description: SWIM Location: 84661 9-846721 bp Feature: gene Location: 846806-849475 bp Feature: domain Description: HEAT_2 Location: 847661-847811 bp Feature: domain Description: HEAT_2 Location: 847661 -84781 1 bp Feature: domain Description: HEAT_2 Location: 847928-848078 bp Feature: domain Description: HEAT_2 Location: 847928-848078 bp Feature: gene Location: 2254849-2255721 bp Feature: domain Description: nucleoid_noc Location: 2254927-2255542 bp Feature: domain Description: nucleoid_noc Location: 2254927-2255542 bp Feature: gene Location: 2255708-2256409 bp Feature: domain Description: BcsQ Location: 2255711-2256401 bp Feature: domain Description: BcsQ Location: 225571 1 -2256401 bp Feature: gene Location: 2256895-2258346 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2257234-2257861 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2257234-2257861 bp Feature: domain Description: Intron_maturas2 Location: 2257984-2258269 bp Feature: domain Description: Intron_maturas2 Location: 2257984-2258269 bp Feature: gene Location: 2258664-2258855 bp Feature: gene Location: 2258926-2259744 bp Feature: domain Description: nucleoid_noc Location: 2258989-2259742 bp Feature: domain Description: nucleoid_noc Location: 2258989-2259742 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT L28 (TIGR00009), DUF572 (pfam04502), RVT-Retrons, SWIM (pfam04434), HEAT_2 (pfam13646), nucleoid_noc (TIGR04285), BcsQ (COG1192), RVT-GII, Intron_maturas2 (pfam01348)