myRT

myRT report for GCA_000213675.2_ASM21367v2

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Seq: AFGV01000036.1 Shigella flexneri K-218 gssK218.contig.35, whole genome shotgun sequence (18406 bp)
Overview 1 RT 1: 12208-15873 bp Neighborhood of RT #1 [12208, 15875] PAP2_acid_phosphatase Tra5 RVT-GII ushA Feature: gene Location: 12208-12957 bp Feature: domain Description: PAP2_acid_phosphatase Location: 12283-12937 bp Feature: domain Description: PAP2_acid_phosphatase Location: 1 2283-1 2937 bp Feature: gene Location: 13353-13553 bp Feature: domain Description: Tra5 Location: 13362-13536 bp Feature: domain Description: Tra5 Location: 1 3362-1 3536 bp Feature: gene Location: 13599-14369 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13866-14361 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 3866-1 4361 bp Feature: gene Location: 15101-15232 bp Feature: gene Location: 15255-15875 bp Feature: domain Description: ushA Location: 15258-15873 bp Feature: domain Description: ushA Location: 1 5258-1 5873 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PAP2_acid_phosphatase (cd03397), Tra5 (COG2801), RVT-GII, ushA (PRK09558)

Seq: AFGV01000042.1 Shigella flexneri K-218 gssK218.contig.41, whole genome shotgun sequence (378616 bp)
Overview 1 RT 1: 18771-22217 bp Neighborhood of RT #1 [18771, 22237] InsE PHA02517 RVT-GII GIIM PHA02517 PHA02517 Feature: gene Location: 18771-19073 bp Feature: domain Description: InsE Location: 18810-19059 bp Feature: domain Description: InsE Location: 18810-19059 bp Feature: gene Location: 19129-19554 bp Feature: domain Description: PHA02517 Location: 19153-19489 bp Feature: domain Description: PHA02 517 Location: 19153-19489 bp Feature: gene Location: 20161-21669 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20419-21151 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 0419-2 1151 bp Feature: domain Description: GIIM Note: maturase Location: 21226-21424 bp Feature: domain Description: GIIM Note: maturase Location: 2 12 2 6-2 142 4 bp Feature: gene Location: 21822-21998 bp Feature: domain Description: PHA02517 Location: 21825-21927 bp Feature: domain Description: PHA02 517 Location: 2 182 5-2 192 7 bp Feature: gene Location: 22067-22237 bp Feature: domain Description: PHA02517 Location: 22073-22217 bp Feature: domain Description: PHA02 517 Location: 2 2 073-2 2 2 17 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: AFGV01000073.1 Shigella flexneri K-218 gssK218.contig.72, whole genome shotgun sequence (22677 bp)
Overview 1 RT 1: 2510-5837 bp Neighborhood of RT #1 [2510, 5851] PHA02517 DDE_Tnp_IS66 RVT-GII GIIM DDE_Tnp_IS66_C COG3547 Feature: gene Location: 2510-3157 bp Feature: domain Description: PHA02517 Location: 2513-3155 bp Feature: domain Description: PHA02517 Location: 2513 -3 155 bp Feature: gene Location: 3245-3382 bp Feature: domain Description: DDE_Tnp_IS66 Location: 3257-3356 bp Feature: domain Description: DDE_Tnp_IS66 Location: 3 257-3 3 56 bp Feature: gene Location: 3950-5077 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4046-4700 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4046-4700 bp Feature: domain Description: GIIM Note: maturase Location: 4778-5000 bp Feature: domain Description: GIIM Note: maturase Location: 4778-5000 bp Feature: gene Location: 5196-5339 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 5205-5316 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 5205-53 16 bp Feature: gene Location: 5366-5851 bp Feature: domain Description: COG3547 Location: 5384-5837 bp Feature: domain Description: COG3 547 Location: 53 84-583 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), DDE_Tnp_IS66 (pfam03050), RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66_C (pfam13817), COG3547 (Transposase )