myRT

myRT report for GCA_000214075.2_ASM21407v1

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Seq: AFJC01000038.1 Microcoleus vaginatus FGP-2 ctg183, whole genome shotgun sequence (5578 bp)
Overview 1 RT 1: 948-4429 bp Neighborhood of RT #1 [948, 4429] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 948-1157 bp Feature: gene Location: 2148-3890 bp Ori: EGK83447.1 Feature: domain Description: RVT_N Location: 2193-2439 bp Feature: domain Description: RVT_N Location: 21 93-2439 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2481-3201 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2481 -3201 bp Feature: domain Description: GIIM Note: maturase Location: 3282-3504 bp Feature: domain Description: GIIM Note: maturase Location: 3282-3504 bp Feature: domain Description: HNHc Note: nucleases Location: 3687-3825 bp Feature: domain Description: HNHc Note: nucleases Location: 3687-3825 bp Feature: gene Location: 4106-4429 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: AFJC01000020.1 Microcoleus vaginatus FGP-2 ctg192, whole genome shotgun sequence (105060 bp)
Overview 1 RT 1: 43299-57011 bp Neighborhood of RT #1 [43299, 57016] STKc_PknB_like COG3899 GAF BaeS DUF2817 RVT-AbiA PRK02546 PRK07376 Feature: gene Location: 43299-49010 bp Ori: EGK83968.1 Feature: domain Description: STKc_PknB_like Location: 43323-44106 bp Feature: domain Description: STKc_PknB_like Location: 4332 3-44106 bp Feature: domain Description: COG3899 Location: 44199-46842 bp Feature: domain Description: COG3899 Location: 44199-46842 bp Feature: domain Description: GAF Location: 47382-47808 bp Feature: domain Description: GAF Location: 47382 -47808 bp Feature: domain Description: BaeS Location: 47913-48972 bp Feature: domain Description: BaeS Location: 47913-48972 bp Feature: gene Location: 49365-50438 bp Ori: EGK83969.1 Feature: domain Description: DUF2817 Location: 49386-50403 bp Feature: domain Description: DUF2 817 Location: 49386-50403 bp Feature: gene Location: 50804-52762 bp Ori: EGK83970.1 Feature: RT Description: RVT-AbiA Note: AbiA RT Location: 51275-51785 bp Feature: RT Description: RVT-AbiA Note: AbiA RT Location: 512 75-51785 bp Feature: gene Location: 52930-54516 bp Ori: EGK83971.1 Feature: domain Description: PRK02546 Location: 52936-54484 bp Feature: domain Description: PRK02 546 Location: 52 936-54484 bp Feature: gene Location: 54971-57016 bp Ori: EGK83972.1 Feature: domain Description: PRK07376 Location: 54974-57011 bp Feature: domain Description: PRK07376 Location: 54974-57011 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT STKc_PknB_like (cd14014), COG3899 (Predicted ATPase ), GAF (smart00065), BaeS (COG0642), DUF2817 (pfam10994), RVT-AbiA, PRK02546 (NAD(P)H-quinone oxidoreductase subunit 4; Provisional), PRK07376 (NADH-quinone oxidoreductase subunit L)

Seq: AFJC01000009.1 Microcoleus vaginatus FGP-2 ctg212, whole genome shotgun sequence (279989 bp)
Overview 1 RT 1: 2985-8536 bp 2 RT 2: 126131-134409 bp Neighborhood of RT #1 [2985, 8559] fabG KOG0910 RVT_N RVT-GII YkfC McrA YdjM prmA Neighborhood of RT #2 [126131, 134420] PRK07403 nadD RVT_N RVT-GII GIIM McrA murC murB Feature: gene Location: 2985-3749 bp Ori: EGK86041.1 Feature: domain Description: fabG Location: 3015-3744 bp Feature: domain Description: fabG Location: 3 015-3 744 bp Feature: gene Location: 3823-4140 bp Ori: EGK86042.1 Feature: domain Description: KOG0910 Location: 3835-4126 bp Feature: domain Description: KOG0910 Location: 3 83 5-4126 bp Feature: gene Location: 4316-6061 bp Ori: EGK86043.1 Feature: domain Description: RVT_N Location: 4352-4598 bp Feature: domain Description: RVT_N Location: 43 52-4598 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4640-5324 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4640-53 24 bp Feature: domain Description: YkfC Location: 5579-5675 bp Feature: domain Description: YkfC Location: 5579-5675 bp Feature: domain Description: McrA Location: 5720-6020 bp Feature: domain Description: McrA Location: 5720-6020 bp Feature: gene Location: 7021-7614 bp Ori: EGK86044.1 Feature: domain Description: YdjM Location: 7048-7507 bp Feature: domain Description: YdjM Location: 7048-7507 bp Feature: gene Location: 7669-8559 bp Ori: EGK86045.1 Feature: domain Description: prmA Location: 7684-8536 bp Feature: domain Description: prmA Location: 7684-853 6 bp Feature: gene Location: 126131-127150 bp Ori: EGK86134.1 Feature: domain Description: PRK07403 Location: 126134-127145 bp Feature: domain Description: PRK07403 Location: 12613 4-127145 bp Feature: gene Location: 127341-128057 bp Ori: EGK86135.1 Feature: domain Description: nadD Location: 127347-128055 bp Feature: domain Description: nadD Location: 1273 47-128055 bp Feature: gene Location: 128564-130411 bp Ori: EGK86136.1 Feature: domain Description: RVT_N Location: 128609-128855 bp Feature: domain Description: RVT_N Location: 128609-128855 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 128897-129596 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 128897-129596 bp Feature: domain Description: GIIM Note: maturase Location: 129701-129926 bp Feature: domain Description: GIIM Note: maturase Location: 129701-129926 bp Feature: domain Description: McrA Location: 130040-130304 bp Feature: domain Description: McrA Location: 13 0040-13 03 04 bp Feature: gene Location: 131757-133313 bp Ori: EGK86137.1 Feature: domain Description: murC Location: 131778-133299 bp Feature: domain Description: murC Location: 13 1778-13 3 299 bp Feature: gene Location: 133464-134420 bp Ori: EGK86138.1 Feature: domain Description: murB Location: 133536-134409 bp Feature: domain Description: murB Location: 13 3 53 6-13 4409 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT fabG (PRK12825), KOG0910 (KOG0910, Thioredoxin-like protein ), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), McrA (COG4058), YdjM (pfam04307), prmA (TIGR00406), PRK07403 (type I glyceraldehyde-3-phosphate dehydrogenase), nadD (PRK07152)
GIIM (pfam08388), murC (TIGR01082), murB (TIGR00179)

Seq: AFJC01000007.1 Microcoleus vaginatus FGP-2 ctg229, whole genome shotgun sequence (350276 bp)
Overview 1 RT 1: 245730-251106 bp Neighborhood of RT #1 [245730, 251174] COG1543 RVT_N RVT-GII GIIM HNHc HTH_32 DDE_3 Feature: gene Location: 245730-247319 bp Ori: EGK86863.1 Feature: domain Description: COG1543 Location: 245739-247314 bp Feature: domain Description: COG154 3 Location: 24 5739-24 7314 bp Feature: gene Location: 247375-247497 bp Feature: gene Location: 247658-249316 bp Ori: EGK86865.1 Feature: domain Description: RVT_N Location: 247709-247952 bp Feature: domain Description: RVT_N Location: 24 7709-24 7952 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 247994-248618 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24 7994 -24 8618 bp Feature: domain Description: GIIM Note: maturase Location: 248675-248903 bp Feature: domain Description: GIIM Note: maturase Location: 24 8675-24 8903 bp Feature: domain Description: HNHc Note: nucleases Location: 249128-249287 bp Feature: domain Description: HNHc Note: nucleases Location: 24 9128-24 9287 bp Feature: gene Location: 251176-251802 bp Ori: EGK86866.1 Feature: domain Description: HTH_32 Location: 251353-251566 bp Feature: domain Description: HTH_32 Location: 251353-251566 bp Feature: gene Location: 250776-251174 bp Ori: EGK86866.1 Feature: domain Description: DDE_3 Location: 250791-251106 bp Feature: domain Description: DDE_3 Location: 250791-251106 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG1543 (Predicted glycosyl hydrolase, contains GH57 and DUF1957 domains ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), HTH_32 (pfam13565), DDE_3 (pfam13358)