myRT

myRT report for GCA_000214315.2_ASM21431v2

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Seq: AFDI01000005.1 Gardnerella vaginalis 315-A contig00013, whole genome shotgun sequence (137198 bp)
Overview 1 RT 1: 13704-17594 bp Neighborhood of RT #1 [13704, 17605] Nudix_Hydrolase_29 RVT-UG15 Integrase_DNA Phage_int_SAM_5 Phage_integrase Tn916-Xis Feature: gene Location: 13704-14189 bp Ori: EGL14552.1 Feature: domain Description: Nudix_Hydrolase_29 Location: 13749-14130 bp Feature: domain Description: Nudix_Hydrolase_29 Location: 1 3749-1 41 30 bp Feature: gene Location: 14193-14342 bp Feature: gene Location: 14720-15934 bp Ori: EGL14622.1 Feature: RT Description: RVT-UG15 Note: UG15 RT Location: 14858-15257 bp Feature: RT Description: RVT-UG1 5 Note: UG1 5 RT Location: 1 4858-1 5257 bp Feature: gene Location: 16103-17320 bp Ori: EGL14608.1 Feature: domain Description: Integrase_DNA Location: 16106-16316 bp Feature: domain Description: Integrase_DNA Location: 1 61 06-1 631 6 bp Feature: domain Description: Phage_int_SAM_5 Location: 16373-16625 bp Feature: domain Description: Phage_int_SAM_5 Location: 1 6373-1 6625 bp Feature: domain Description: Phage_integrase Location: 16673-17252 bp Feature: domain Description: Phage_integrase Location: 1 6673-1 7252 bp Feature: gene Location: 17402-17605 bp Ori: EGL14526.1 Feature: domain Description: Tn916-Xis Location: 17417-17594 bp Feature: domain Description: Tn91 6-Xis Location: 1 741 7-1 7594 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Nudix_Hydrolase_29 (cd04688), RVT-UG15, Integrase_DNA (pfam02920), Phage_int_SAM_5 (pfam13102), Phage_integrase (pfam00589), Tn916-Xis (pfam09035)

Seq: AFDI01000006.1 Gardnerella vaginalis 315-A contig00018, whole genome shotgun sequence (413258 bp)
Overview 1 RT 1: 40124-43691 bp Neighborhood of RT #1 [40124, 43691] Phage_holin_4_1 Amidase_2 RVT-DGRs Feature: gene Location: 40124-40600 bp Ori: EGL14348.1 Feature: domain Description: Phage_holin_4_1 Location: 40166-40427 bp Feature: domain Description: Phage_holin_4_1 Location: 40166-4042 7 bp Feature: gene Location: 40620-41516 bp Ori: EGL14432.1 Feature: domain Description: Amidase_2 Location: 40698-41055 bp Feature: domain Description: Amidase_2 Location: 40698-41055 bp Feature: gene Location: 41769-42890 bp Ori: EGL14323.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 42042-42642 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 42 042 -42 642 bp Feature: gene Location: 43286-43420 bp Feature: gene Location: 43557-43691 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_holin_4_1 (pfam05105), Amidase_2 (pfam01510), RVT-DGRs