myRT

myRT report for GCA_000215775.5_PA13_miseq

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Seq: AEVV03000003.1 Pseudomonas aeruginosa HB13 strain 138244 contig000003, whole genome shotgun sequence (730598 bp)
Overview 1 RT 1: 9020-14760 bp Neighborhood of RT #1 [9020, 14795] RVT-UG5 YgiQ DUF4823 Feature: gene Location: 9020-9418 bp Feature: gene Location: 9797-12973 bp Ori: ERF06764.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 10334-10832 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 1 0334-1 0832 bp Feature: gene Location: 13325-14098 bp Ori: ERF06765.1 Feature: domain Description: YgiQ Location: 13340-14000 bp Feature: domain Description: YgiQ Location: 1 3340-1 4000 bp Feature: gene Location: 14163-14795 bp Ori: ERF06766.1 Feature: domain Description: DUF4823 Location: 14319-14760 bp Feature: domain Description: DUF4823 Location: 1 431 9-1 4760 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG5, YgiQ (COG1032), DUF4823 (pfam16105)

Seq: AEVV03000005.1 Pseudomonas aeruginosa HB13 strain 138244 contig000005, whole genome shotgun sequence (679502 bp)
Overview 1 RT 1: 594162-604469 bp 2 RT 2: 620727-628890 bp Neighborhood of RT #1 [594162, 604471] COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [620727, 628904] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 Feature: gene Location: 594162-595283 bp Ori: ERF06040.1 Feature: domain Description: COG3177 Location: 594180-595272 bp Feature: domain Description: COG3177 Location: 594180-5952 72 bp Feature: gene Location: 595545-595682 bp Feature: gene Location: 596008-597693 bp Ori: ERF06042.1 Feature: domain Description: RVT_N Location: 596065-596305 bp Feature: domain Description: RVT_N Location: 596065-596305 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 596353-596989 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 596353-596989 bp Feature: domain Description: GIIM Note: maturase Location: 597043-597274 bp Feature: domain Description: GIIM Note: maturase Location: 597043-5972 74 bp Feature: domain Description: HNH Note: nucleases Location: 597526-597664 bp Feature: domain Description: HNH Note: nucleases Location: 59752 6-597664 bp Feature: gene Location: 598774-602511 bp Ori: ERF06043.1 Feature: domain Description: PBP2_BvgS_HisK_like Location: 598882-599539 bp Feature: domain Description: PBP2 _BvgS_HisK_like Location: 598882 -599539 bp Feature: domain Description: PRK09776 Location: 599752-600223 bp Feature: domain Description: PRK09776 Location: 599752 -6002 2 3 bp Feature: domain Description: PAS Location: 600280-600805 bp Feature: domain Description: PAS Location: 6002 80-600805 bp Feature: domain Description: PRK10060 Location: 600814-602461 bp Feature: domain Description: PRK10060 Location: 600814-602 461 bp Feature: gene Location: 602618-604471 bp Ori: ERF06044.1 Feature: domain Description: PRK05658 Location: 602630-604469 bp Feature: domain Description: PRK05658 Location: 602 630-604469 bp Feature: gene Location: 620727-622019 bp Ori: ERF06062.1 Feature: domain Description: PRK10770 Location: 620817-622011 bp Feature: domain Description: PRK10770 Location: 62 0817-62 2 011 bp Feature: gene Location: 622000-624771 bp Ori: ERF06063.1 Feature: domain Description: LptD Location: 622195-624757 bp Feature: domain Description: LptD Location: 62 2 195-62 4757 bp Feature: gene Location: 624904-626616 bp Ori: ERF06064.1 Feature: domain Description: RVT_N Location: 624961-625204 bp Feature: domain Description: RVT_N Location: 62 4961-62 52 04 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 625249-625885 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 62 52 49-62 5885 bp Feature: domain Description: YkfC Location: 626095-626245 bp Feature: domain Description: YkfC Location: 62 6095-62 62 45 bp Feature: domain Description: HNH Note: nucleases Location: 626422-626560 bp Feature: domain Description: HNH Note: nucleases Location: 62 642 2 -62 6560 bp Feature: gene Location: 627457-627591 bp Feature: gene Location: 627888-628904 bp Ori: ERF06066.1 Feature: domain Description: COG3178 Location: 627891-628890 bp Feature: domain Description: COG3178 Location: 62 7891-62 8890 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)
PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family )