myRT

myRT report for GCA_000215795.5_PA15_miseq

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Seq: AEVW03000002.1 Pseudomonas aeruginosa HB15 contig000002, whole genome shotgun sequence (1386613 bp)
Overview 1 RT 1: 1017930-1026139 bp 2 RT 2: 1042404-1052698 bp Neighborhood of RT #1 [1017930, 1026147] COG3178 RVT_N RVT-GII YkfC HNH LptD PRK10770 Neighborhood of RT #2 [1042404, 1052709] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH COG3177 Feature: gene Location: 1017930-1018946 bp Feature: domain Description: COG3178 Location: 1017933-1018932 bp Feature: domain Description: COG31 78 Location: 1 01 7933-1 01 8932 bp Feature: gene Location: 1019231-1019377 bp Feature: gene Location: 1020219-1021931 bp Feature: RT Description: RVT_N Location: 1020276-1020519 bp Feature: RT Description: RVT_N Location: 1 020276-1 02051 9 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1020564-1021200 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 020564-1 021 200 bp Feature: domain Description: YkfC Location: 1021407-1021560 bp Feature: domain Description: YkfC Location: 1 021 407-1 021 560 bp Feature: domain Description: HNH Note: nucleases Location: 1021737-1021875 bp Feature: domain Description: HNH Note: nucleases Location: 1 021 737-1 021 875 bp Feature: gene Location: 1022064-1024874 bp Feature: domain Description: LptD Location: 1022259-1024860 bp Feature: domain Description: LptD Location: 1 022259-1 024860 bp Feature: gene Location: 1024855-1026147 bp Feature: domain Description: PRK10770 Location: 1024945-1026139 bp Feature: domain Description: PRK1 0770 Location: 1 024945-1 0261 39 bp Feature: gene Location: 1042404-1044257 bp Feature: domain Description: PRK05658 Location: 1042416-1044255 bp Feature: domain Description: PRK05658 Location: 1 04241 6-1 044255 bp Feature: gene Location: 1044364-1048101 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 1044472-1045129 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 1 044472-1 0451 29 bp Feature: domain Description: PRK09776 Location: 1045342-1045813 bp Feature: domain Description: PRK09776 Location: 1 045342-1 04581 3 bp Feature: domain Description: PAS Location: 1045858-1046395 bp Feature: domain Description: PAS Location: 1 045858-1 046395 bp Feature: domain Description: PRK10060 Location: 1046404-1048051 bp Feature: domain Description: PRK1 0060 Location: 1 046404-1 048051 bp Feature: gene Location: 1049182-1050867 bp Feature: RT Description: RVT_N Location: 1049239-1049479 bp Feature: RT Description: RVT_N Location: 1 049239-1 049479 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1049527-1050163 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 049527-1 0501 63 bp Feature: domain Description: GIIM Note: maturase Location: 1050217-1050448 bp Feature: domain Description: GIIM Note: maturase Location: 1 05021 7-1 050448 bp Feature: domain Description: HNH Note: nucleases Location: 1050700-1050838 bp Feature: domain Description: HNH Note: nucleases Location: 1 050700-1 050838 bp Feature: gene Location: 1051210-1051329 bp Feature: gene Location: 1051588-1052709 bp Feature: domain Description: COG3177 Location: 1051606-1052698 bp Feature: domain Description: COG31 77 Location: 1 051 606-1 052698 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), LptD (COG1452), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional)
PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), GIIM (pfam08388), COG3177 (Fic family protein )