myRT

myRT report for GCA_000215935.3_HLPCO_V2

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Seq: AFNU02000005.1 Haloplasma contractile SSD-17B Contig5, whole genome shotgun sequence (202362 bp)
Overview 1 RT 1: 15878-20897 bp Neighborhood of RT #1 [15878, 20911] RDD RssA RVT-GII GIIM AzoR Feature: gene Location: 15878-16516 bp Feature: domain Description: RDD Location: 15959-16436 bp Feature: domain Description: RDD Location: 1 5959-1 6436 bp Feature: gene Location: 16822-17604 bp Feature: domain Description: RssA Location: 16849-17542 bp Feature: domain Description: RssA Location: 1 6849-1 7542 bp Feature: gene Location: 17875-19149 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18076-18691 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 8076-1 8691 bp Feature: domain Description: GIIM Note: maturase Location: 18757-18952 bp Feature: domain Description: GIIM Note: maturase Location: 1 8757-1 8952 bp Feature: gene Location: 19733-19936 bp Feature: gene Location: 20267-20911 bp Feature: domain Description: AzoR Location: 20273-20897 bp Feature: domain Description: AzoR Location: 20273-20897 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RDD (pfam06271), RssA (COG1752), RVT-GII, GIIM (pfam08388), AzoR (COG1182)

Seq: AFNU02000002.1 Haloplasma contractile SSD-17B Contig2, whole genome shotgun sequence (472486 bp)
Overview 1 RT 1: 405878-419922 bp Neighborhood of RT #1 [405878, 422297] DUF5011 DUF5011 LRR_5 DUF5011 LRR_5 LRR_5 RVT-GII GIIM DUF1871 DUF1871 YD_repeat_2x Rhs_assc_core DUF4258 RVT-GII SIR2-like Feature: gene Location: 405878-407776 bp Feature: gene Location: 409190-411802 bp Feature: domain Description: DUF5011 Location: 409403-409520 bp Feature: domain Description: DUF5011 Location: 409403-40952 0 bp Feature: domain Description: DUF5011 Location: 409652-409769 bp Feature: domain Description: DUF5011 Location: 409652 -409769 bp Feature: domain Description: LRR_5 Location: 409892-410252 bp Feature: domain Description: LRR_5 Location: 409892 -4102 52 bp Feature: domain Description: DUF5011 Location: 410525-410642 bp Feature: domain Description: DUF5011 Location: 41052 5-410642 bp Feature: domain Description: LRR_5 Location: 410771-411131 bp Feature: domain Description: LRR_5 Location: 410771-411131 bp Feature: domain Description: LRR_5 Location: 411431-411779 bp Feature: domain Description: LRR_5 Location: 411431-411779 bp Feature: gene Location: 412611-413537 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 412617-413232 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 412 617-4132 32 bp Feature: domain Description: GIIM Note: maturase Location: 413313-413523 bp Feature: domain Description: GIIM Note: maturase Location: 413313-41352 3 bp Feature: gene Location: 413600-413854 bp Feature: gene Location: 414599-415105 bp Feature: domain Description: DUF1871 Location: 414620-414851 bp Feature: domain Description: DUF1871 Location: 41462 0-414851 bp Feature: domain Description: DUF1871 Location: 414881-415028 bp Feature: domain Description: DUF1871 Location: 414881-41502 8 bp Feature: gene Location: 415107-416105 bp Feature: domain Description: YD_repeat_2x Location: 415116-415194 bp Feature: domain Description: YD_repeat_2 x Location: 415116-415194 bp Feature: domain Description: Rhs_assc_core Location: 415278-415533 bp Feature: domain Description: Rhs_assc_core Location: 4152 78-415533 bp Feature: domain Description: DUF4258 Location: 415884-415977 bp Feature: domain Description: DUF42 58 Location: 415884-415977 bp Feature: gene Location: 416936-418231 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 417203-417881 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4172 03-417881 bp Feature: gene Location: 418511-418693 bp Feature: gene Location: 419292-422297 bp Feature: domain Description: SIR2-like Location: 419343-419922 bp Feature: domain Description: SIR2 -like Location: 419343-41992 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF5011 (pfam16403), LRR_5 (pfam13306), RVT-GII, GIIM (pfam08388), DUF1871 (pfam08958), YD_repeat_2x (TIGR01643), Rhs_assc_core (TIGR03696), DUF4258 (pfam14076), SIR2-like (cd01406)