myRT

myRT report for GCA_000217955.4_PfluHK442.0

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Seq: AFOY02000004.1 Pseudomonas fluorescens HK44 Contig4, whole genome shotgun sequence (600409 bp) Associated domains: RVT-DGRs, Avd_like (cd16376), DUF1566 (pfam07603), LprI (pfam07007), DUF3298 (pfam11738), RVT-GII, LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), Resolvase (smart00857)
Recombinase (pfam07508), Zn_ribbon_recom (pfam13408), GIIM (pfam08388), DDE_Tnp_IS66_C (pfam13817), AcoR (COG3284), IS5 (COG3039), RVT_N (pfam13655)

Seq: AFOY02000007.1 Pseudomonas fluorescens HK44 Contig7, whole genome shotgun sequence (214325 bp) Associated domains: flgD (PRK12813), flgE (PRK12637), RVT-GII, GIIM (pfam08388), PRK07207 (ribonucleoside-diphosphate reductase subunit alpha), OmpR (COG0745), cmk (TIGR00017), rpsA (TIGR00717), hip (TIGR00988)

Seq: AFOY02000009.1 Pseudomonas fluorescens HK44 Contig9, whole genome shotgun sequence (326905 bp) Associated domains: livG (PRK11300), livF (PRK11614), RVT-GII, GIIM (pfam08388), COG5572 (Uncharacterized membrane protein )

Seq: AFOY02000010.1 Pseudomonas fluorescens HK44 Contig10, whole genome shotgun sequence (260498 bp) Associated domains: GIY-YIG_UvrC_Cho (cd10434), RVT-UG2

Seq: AFOY02000015.1 Pseudomonas fluorescens HK44 Contig15, whole genome shotgun sequence (1617628 bp) Associated domains: MhpC (COG0596), RVT-GII, Tar (COG0840), YkvA (COG3339), PRK11359 (cyclic-di-GMP phosphodiesterase; Provisional), GIIM (pfam08388), DUF5329 (pfam17263), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), COG3821 (Uncharacterized membrane protein )
PRK15433 (branched-chain amino acid transporter carrier protein BrnQ), PRK05678 (succinyl-CoA synthetase subunit alpha; Validated), sucC (PRK00696), GATase_4 (pfam13230), RVT_N (pfam13655), HNH (pfam01844), PtrB (COG1770), CAP_ED (cl00047)

Seq: AFOY02000017.1 Pseudomonas fluorescens HK44 Contig17, whole genome shotgun sequence (174234 bp) Associated domains: RutF (TIGR03615), RVT-GII, GIIM (pfam08388)

Seq: AFOY02000026.1 Pseudomonas fluorescens HK44 Contig26, whole genome shotgun sequence (72476 bp) Associated domains: PRK11139 (DNA-binding transcriptional activator GcvA; Provisional), RaiA (COG1544), RVT-GII, GIIM (pfam08388), hydroxyacyl-CoA-like_DH_SDR_c-like (cd05353)

Seq: AFOY02000027.1 Pseudomonas fluorescens HK44 Contig27, whole genome shotgun sequence (174456 bp) Associated domains: IS5 (COG3039), RVT-UG5, BRR2 (COG1204), Integrase_1 (pfam12835)

Seq: AFOY02000028.1 Pseudomonas fluorescens HK44 Contig28, whole genome shotgun sequence (88690 bp) Associated domains: PRK04914 (RNA polymerase-associated protein RapA), RVT-GII, GIIM (pfam08388)