myRT

myRT report for GCA_000217975.2_ASM21797v2

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Seq: GL988050.1 Escherichia coli O104:H4 str. H112180280 genomic scaffold scaffold00001, whole genome shotgun sequence (5226948 bp)
Overview 1 RT 1: 13065-18758 bp 2 RT 2: 211627-214855 bp 3 RT 3: 3833326-3837711 bp 4 RT 4: 3849390-3855092 bp Neighborhood of RT #1 [13065, 18823] TonB-siderophor PHA02517 RVT-GII GIIM PHA02517 Neighborhood of RT #2 [211627, 214855] InsE PHA02517 RVT-GII Neighborhood of RT #3 [3833326, 3837713] HTH_38 Tra8 PHA02517 RVT-GII PHA02517 Neighborhood of RT #4 [3849390, 3855145] PHA02517 RVT-GII GIIM VI_ClpV1 Feature: gene Location: 13065-15263 bp Feature: domain Description: TonB-siderophor Location: 13200-15261 bp Feature: domain Description: TonB-siderophor Location: 1 3200-1 5261 bp Feature: gene Location: 15665-16111 bp Feature: domain Description: PHA02517 Location: 15668-16109 bp Feature: domain Description: PHA0251 7 Location: 1 5668-1 61 09 bp Feature: gene Location: 16228-17751 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16501-17233 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 6501 -1 7233 bp Feature: domain Description: GIIM Note: maturase Location: 17308-17506 bp Feature: domain Description: GIIM Note: maturase Location: 1 7308-1 7506 bp Feature: gene Location: 17705-18121 bp Feature: gene Location: 18344-18823 bp Feature: domain Description: PHA02517 Location: 18404-18758 bp Feature: domain Description: PHA0251 7 Location: 1 8404-1 8758 bp Feature: gene Location: 211627-211929 bp Feature: domain Description: InsE Location: 211666-211915 bp Feature: domain Description: InsE Location: 21 1 666-21 1 91 5 bp Feature: gene Location: 211985-212410 bp Feature: domain Description: PHA02517 Location: 212009-212345 bp Feature: domain Description: PHA0251 7 Location: 21 2009-21 2345 bp Feature: gene Location: 213002-214312 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 213275-214007 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 3275-21 4007 bp Feature: gene Location: 214236-214526 bp Feature: gene Location: 214721-214855 bp Feature: gene Location: 3833326-3834477 bp Feature: domain Description: HTH_38 Location: 3833335-3833449 bp Feature: domain Description: HTH_38 Location: 3833335-3833449 bp Feature: domain Description: Tra8 Location: 3833485-3834466 bp Feature: domain Description: Tra8 Location: 3833485-3834466 bp Feature: gene Location: 3834608-3835033 bp Feature: domain Description: PHA02517 Location: 3834632-3834968 bp Feature: domain Description: PHA0251 7 Location: 3834632-3834968 bp Feature: gene Location: 3835625-3836920 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3835898-3836630 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3835898-3836630 bp Feature: gene Location: 3836860-3837150 bp Feature: gene Location: 3837327-3837713 bp Feature: domain Description: PHA02517 Location: 3837330-3837711 bp Feature: domain Description: PHA0251 7 Location: 3837330-383771 1 bp Feature: gene Location: 3849390-3849539 bp Feature: gene Location: 3850096-3850482 bp Feature: domain Description: PHA02517 Location: 3850099-3850480 bp Feature: domain Description: PHA0251 7 Location: 3850099-3850480 bp Feature: gene Location: 3850659-3851900 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3850932-3851382 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3850932-3851 382 bp Feature: domain Description: GIIM Note: maturase Location: 3851457-3851655 bp Feature: domain Description: GIIM Note: maturase Location: 3851 457-3851 655 bp Feature: gene Location: 3852013-3852207 bp Feature: gene Location: 3852596-3855145 bp Feature: domain Description: VI_ClpV1 Location: 3852632-3855092 bp Feature: domain Description: VI_ClpV1 Location: 3852632-3855092 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TonB-siderophor (TIGR01783), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), InsE (COG2963), HTH_38 (pfam13936), Tra8 (COG2826), VI_ClpV1 (TIGR03345)