myRT

myRT report for GCA_000218235.1_ASM21823v1

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Seq: GL945017.1 Prevotella multisaccharivorax DSM 17128 genomic scaffold scaffold_3, whole genome shotgun sequence (3334154 bp)
Overview 1 RT 1: 105606-113821 bp 2 RT 2: 123047-131070 bp 3 RT 3: 192612-202425 bp 4 RT 4: 812431-818449 bp 5 RT 5: 867947-874711 bp 6 RT 6: 1180318-1188701 bp 7 RT 7: 1320145-1329288 bp 8 RT 8: 1564701-1575376 bp 9 RT 9: 1678113-1683983 bp 10 RT 10: 1887159-1891743 bp 11 RT 11: 2008692-2014397 bp 12 RT 12: 2096687-2103588 bp 13 RT 13: 2343217-2347749 bp Neighborhood of RT #1 [105606, 113826] Peptidase_C10 greA RVT-GII RVT-GII GIIM LptF_LptG PRK09311 Neighborhood of RT #2 [123047, 131096] Bac_rhamnosid_N Bac_rhamnosid Bac_rhamnosid6H Bac_rhamnosid_C GlnA RVT-GII GIIM FadM POR Neighborhood of RT #3 [192612, 202472] YicI DUF3467 RVT-GII GIIM PRK00566 Neighborhood of RT #4 [812431, 818451] cysS OMP_b-brl_2 RVT-GII GIIM PRK05912 YidD Neighborhood of RT #5 [867947, 874725] MPP_YbbF-LpxH CitT RVT-GII GIIM PRK00180 eutD Neighborhood of RT #6 [1180318, 1188706] CBM_4_9 AbfA PRK05431 RVT-GII GIIM PRK10808 OmpA gltD gltD Neighborhood of RT #7 [1320145, 1329476] TsaE thioredoxin RVT-GII GIIM YjiL CoA_E_activ COG3580 COG3580 Peptidase_C11 Peptidase_C11 Neighborhood of RT #8 [1564701, 1575381] PRK05222 PRK14031 RVT-GII GIIM COG2509 thrA Neighborhood of RT #9 [1678113, 1683983] Bac_Flav_CT_G DUF4133 RVT-GII Intron_maturas2 DUF4134 Neighborhood of RT #10 [1887159, 1891745] SLR Peptidases_S8_9 RVT-GII GIIM rpmA rplU Neighborhood of RT #11 [2008692, 2014441] HTH_17 HTH_17 RVT-GII GIIM AcrR CarbopepD_reg_2 ligand_gated_channel ligand_gated_channel Neighborhood of RT #12 [2096687, 2103599] DUF5024 chaperone_ClpB RVT-GII RVT-GII GIIM Bcp YqfA Neighborhood of RT #13 [2343217, 2347775] DUF4134 RVT-GII GIIM WYL WYL Feature: gene Location: 105606-107027 bp Feature: domain Description: Peptidase_C10 Location: 106296-106935 bp Feature: domain Description: Peptidase_C1 0 Location: 1 06296-1 06935 bp Feature: gene Location: 107375-107839 bp Feature: domain Description: greA Location: 107384-107834 bp Feature: domain Description: greA Location: 1 07384-1 07834 bp Feature: gene Location: 109004-109489 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 109346-109487 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 09346-1 09487 bp Feature: gene Location: 108043-109002 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 108046-108517 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 08046-1 0851 7 bp Feature: domain Description: GIIM Note: maturase Location: 108571-108781 bp Feature: domain Description: GIIM Note: maturase Location: 1 08571 -1 08781 bp Feature: gene Location: 110651-112588 bp Feature: domain Description: LptF_LptG Location: 110699-112034 bp Feature: domain Description: LptF_LptG Location: 1 1 0699-1 1 2034 bp Feature: gene Location: 112612-113826 bp Feature: domain Description: PRK09311 Location: 112627-113821 bp Feature: domain Description: PRK0931 1 Location: 1 1 2627-1 1 3821 bp Feature: gene Location: 123047-126487 bp Feature: domain Description: Bac_rhamnosid_N Location: 124139-124637 bp Feature: domain Description: Bac_rhamnosid_N Location: 1 241 39-1 24637 bp Feature: domain Description: Bac_rhamnosid Location: 124751-125066 bp Feature: domain Description: Bac_rhamnosid Location: 1 24751 -1 25066 bp Feature: domain Description: Bac_rhamnosid6H Location: 125090-126134 bp Feature: domain Description: Bac_rhamnosid6H Location: 1 25090-1 261 34 bp Feature: domain Description: Bac_rhamnosid_C Location: 126143-126365 bp Feature: domain Description: Bac_rhamnosid_C Location: 1 261 43-1 26365 bp Feature: gene Location: 126545-128056 bp Feature: domain Description: GlnA Location: 126620-127988 bp Feature: domain Description: GlnA Location: 1 26620-1 27988 bp Feature: gene Location: 128181-129626 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 128523-129141 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 28523-1 291 41 bp Feature: domain Description: GIIM Note: maturase Location: 129195-129399 bp Feature: domain Description: GIIM Note: maturase Location: 1 291 95-1 29399 bp Feature: gene Location: 130120-130551 bp Feature: domain Description: FadM Location: 130150-130534 bp Feature: domain Description: FadM Location: 1 301 50-1 30534 bp Feature: gene Location: 130548-131096 bp Feature: domain Description: POR Location: 130581-131070 bp Feature: domain Description: POR Location: 1 30581 -1 31 070 bp Feature: gene Location: 192612-195557 bp Feature: domain Description: YicI Location: 192861-195459 bp Feature: domain Description: YicI Location: 1 92861 -1 95459 bp Feature: gene Location: 195697-196026 bp Feature: domain Description: DUF3467 Location: 195709-195958 bp Feature: domain Description: DUF3467 Location: 1 95709-1 95958 bp Feature: gene Location: 196530-197618 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 196872-197493 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 96872-1 97493 bp Feature: gene Location: 196205-196528 bp Feature: domain Description: GIIM Note: maturase Location: 196208-196343 bp Feature: domain Description: GIIM Note: maturase Location: 1 96208-1 96343 bp Feature: gene Location: 198105-202472 bp Feature: domain Description: PRK00566 Location: 198129-202425 bp Feature: domain Description: PRK00566 Location: 1 981 29-202425 bp Feature: gene Location: 812431-813921 bp Feature: domain Description: cysS Location: 812443-813913 bp Feature: domain Description: cysS Location: 81 2443-81 391 3 bp Feature: gene Location: 814188-814790 bp Feature: domain Description: OMP_b-brl_2 Location: 814263-814725 bp Feature: domain Description: OMP_b-brl_2 Location: 81 4263-81 4725 bp Feature: gene Location: 815272-816717 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 815614-816232 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81 561 4-81 6232 bp Feature: domain Description: GIIM Note: maturase Location: 816286-816490 bp Feature: domain Description: GIIM Note: maturase Location: 81 6286-81 6490 bp Feature: gene Location: 816817-818115 bp Feature: domain Description: PRK05912 Location: 816820-818107 bp Feature: domain Description: PRK0591 2 Location: 81 6820-81 81 07 bp Feature: gene Location: 818206-818451 bp Feature: domain Description: YidD Location: 818245-818449 bp Feature: domain Description: YidD Location: 81 8245-81 8449 bp Feature: gene Location: 867947-868726 bp Feature: domain Description: MPP_YbbF-LpxH Location: 867965-868646 bp Feature: domain Description: MPP_YbbF-LpxH Location: 867965-868646 bp Feature: gene Location: 868785-870347 bp Feature: domain Description: CitT Location: 868860-870330 bp Feature: domain Description: CitT Location: 868860-870330 bp Feature: gene Location: 870451-871896 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 870793-871411 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 870793-871 41 1 bp Feature: domain Description: GIIM Note: maturase Location: 871465-871669 bp Feature: domain Description: GIIM Note: maturase Location: 871 465-871 669 bp Feature: gene Location: 872390-873604 bp Feature: domain Description: PRK00180 Location: 872393-873581 bp Feature: domain Description: PRK001 80 Location: 872393-873581 bp Feature: gene Location: 873682-874725 bp Feature: domain Description: eutD Location: 873685-874711 bp Feature: domain Description: eutD Location: 873685-87471 1 bp Feature: gene Location: 1180318-1182279 bp Feature: domain Description: CBM_4_9 Location: 1180498-1180897 bp Feature: domain Description: CBM_4_9 Location: 1 1 80498-1 1 80897 bp Feature: domain Description: AbfA Location: 1180918-1181932 bp Feature: domain Description: AbfA Location: 1 1 8091 8-1 1 81 932 bp Feature: gene Location: 1182581-1183870 bp Feature: domain Description: PRK05431 Location: 1182584-1183844 bp Feature: domain Description: PRK05431 Location: 1 1 82584-1 1 83844 bp Feature: gene Location: 1184495-1185940 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1184837-1185455 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 84837-1 1 85455 bp Feature: domain Description: GIIM Note: maturase Location: 1185509-1185713 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 85509-1 1 8571 3 bp Feature: gene Location: 1186014-1187111 bp Feature: domain Description: PRK10808 Location: 1186017-1186143 bp Feature: domain Description: PRK1 0808 Location: 1 1 8601 7-1 1 861 43 bp Feature: domain Description: OmpA Location: 1186674-1187046 bp Feature: domain Description: OmpA Location: 1 1 86674-1 1 87046 bp Feature: gene Location: 1187294-1188706 bp Feature: domain Description: gltD Location: 1187297-1188587 bp Feature: domain Description: gltD Location: 1 1 87297-1 1 88587 bp Feature: domain Description: gltD Location: 1188599-1188701 bp Feature: domain Description: gltD Location: 1 1 88599-1 1 88701 bp Feature: gene Location: 1320145-1320555 bp Feature: domain Description: TsaE Location: 1320151-1320550 bp Feature: domain Description: TsaE Location: 1 3201 51 -1 320550 bp Feature: gene Location: 1320653-1320973 bp Feature: domain Description: thioredoxin Location: 1320674-1320959 bp Feature: domain Description: thioredoxin Location: 1 320674-1 320959 bp Feature: gene Location: 1321469-1322914 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1321811-1322429 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 321 81 1 -1 322429 bp Feature: domain Description: GIIM Note: maturase Location: 1322483-1322687 bp Feature: domain Description: GIIM Note: maturase Location: 1 322483-1 322687 bp Feature: gene Location: 1322977-1327323 bp Feature: domain Description: YjiL Location: 1322983-1323757 bp Feature: domain Description: YjiL Location: 1 322983-1 323757 bp Feature: domain Description: CoA_E_activ Location: 1323970-1324750 bp Feature: domain Description: CoA_E_activ Location: 1 323970-1 324750 bp Feature: domain Description: COG3580 Location: 1324975-1326049 bp Feature: domain Description: COG3580 Location: 1 324975-1 326049 bp Feature: domain Description: COG3580 Location: 1326139-1326283 bp Feature: domain Description: COG3580 Location: 1 3261 39-1 326283 bp Feature: gene Location: 1328244-1329476 bp Feature: domain Description: Peptidase_C11 Location: 1328400-1328694 bp Feature: domain Description: Peptidase_C1 1 Location: 1 328400-1 328694 bp Feature: domain Description: Peptidase_C11 Location: 1328823-1329288 bp Feature: domain Description: Peptidase_C1 1 Location: 1 328823-1 329288 bp Feature: gene Location: 1564701-1567013 bp Feature: domain Description: PRK05222 Location: 1564734-1567008 bp Feature: domain Description: PRK05222 Location: 1 564734-1 567008 bp Feature: gene Location: 1567842-1569182 bp Feature: domain Description: PRK14031 Location: 1567845-1569174 bp Feature: domain Description: PRK1 4031 Location: 1 567845-1 5691 74 bp Feature: gene Location: 1569250-1570695 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1569592-1570210 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 569592-1 57021 0 bp Feature: domain Description: GIIM Note: maturase Location: 1570264-1570468 bp Feature: domain Description: GIIM Note: maturase Location: 1 570264-1 570468 bp Feature: gene Location: 1571139-1572752 bp Feature: domain Description: COG2509 Location: 1571229-1572738 bp Feature: domain Description: COG2509 Location: 1 571 229-1 572738 bp Feature: gene Location: 1572943-1575381 bp Feature: domain Description: thrA Location: 1572946-1575376 bp Feature: domain Description: thrA Location: 1 572946-1 575376 bp Feature: gene Location: 1678113-1679480 bp Feature: domain Description: Bac_Flav_CT_G Location: 1678194-1679433 bp Feature: domain Description: Bac_Flav_CT_G Location: 1 6781 94-1 679433 bp Feature: gene Location: 1679528-1679815 bp Feature: domain Description: DUF4133 Location: 1679558-1679741 bp Feature: domain Description: DUF41 33 Location: 1 679558-1 679741 bp Feature: gene Location: 1680157-1681983 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1680433-1681255 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 680433-1 681 255 bp Feature: domain Description: Intron_maturas2 Location: 1681414-1681654 bp Feature: domain Description: Intron_maturas2 Location: 1 681 41 4-1 681 654 bp Feature: gene Location: 1682548-1682835 bp Feature: domain Description: DUF4134 Location: 1682635-1682812 bp Feature: domain Description: DUF41 34 Location: 1 682635-1 68281 2 bp Feature: gene Location: 1683006-1683983 bp Feature: gene Location: 1887159-1887473 bp Feature: domain Description: SLR Location: 1887255-1887423 bp Feature: domain Description: SLR Location: 1 887255-1 887423 bp Feature: gene Location: 1887473-1888876 bp Feature: domain Description: Peptidases_S8_9 Location: 1888022-1888784 bp Feature: domain Description: Peptidases_S8_9 Location: 1 888022-1 888784 bp Feature: gene Location: 1889063-1890508 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1889405-1890023 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 889405-1 890023 bp Feature: domain Description: GIIM Note: maturase Location: 1890077-1890281 bp Feature: domain Description: GIIM Note: maturase Location: 1 890077-1 890281 bp Feature: gene Location: 1891020-1891310 bp Feature: domain Description: rpmA Location: 1891023-1891263 bp Feature: domain Description: rpmA Location: 1 891 023-1 891 263 bp Feature: gene Location: 1891329-1891745 bp Feature: domain Description: rplU Location: 1891431-1891743 bp Feature: domain Description: rplU Location: 1 891 431 -1 891 743 bp Feature: gene Location: 2008692-2008982 bp Feature: domain Description: HTH_17 Location: 2008818-2008944 bp Feature: domain Description: HTH_1 7 Location: 200881 8-2008944 bp Feature: gene Location: 2008982-2009281 bp Feature: domain Description: HTH_17 Location: 2009114-2009261 bp Feature: domain Description: HTH_1 7 Location: 20091 1 4-2009261 bp Feature: gene Location: 2009462-2010907 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2009804-2010422 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2009804-201 0422 bp Feature: domain Description: GIIM Note: maturase Location: 2010476-2010680 bp Feature: domain Description: GIIM Note: maturase Location: 201 0476-201 0680 bp Feature: gene Location: 2011408-2012022 bp Feature: domain Description: AcrR Location: 2011429-2011768 bp Feature: domain Description: AcrR Location: 201 1 429-201 1 768 bp Feature: gene Location: 2012027-2014441 bp Feature: domain Description: CarbopepD_reg_2 Location: 2012096-2012351 bp Feature: domain Description: CarbopepD_reg_2 Location: 201 2096-201 2351 bp Feature: domain Description: ligand_gated_channel Location: 2012432-2012786 bp Feature: domain Description: ligand_gated_channel Location: 201 2432-201 2786 bp Feature: domain Description: ligand_gated_channel Location: 2013278-2014397 bp Feature: domain Description: ligand_gated_channel Location: 201 3278-201 4397 bp Feature: gene Location: 2096687-2097544 bp Feature: domain Description: DUF5024 Location: 2096753-2096972 bp Feature: domain Description: DUF5024 Location: 2096753-2096972 bp Feature: gene Location: 2097681-2100269 bp Feature: domain Description: chaperone_ClpB Location: 2097699-2100255 bp Feature: domain Description: chaperone_ClpB Location: 2097699-21 00255 bp Feature: gene Location: 2101157-2101681 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2101403-2101682 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 01 403-21 01 682 bp Feature: gene Location: 2100331-2101155 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2100334-2100670 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 00334-21 00670 bp Feature: domain Description: GIIM Note: maturase Location: 2100724-2100934 bp Feature: domain Description: GIIM Note: maturase Location: 21 00724-21 00934 bp Feature: gene Location: 2102466-2102918 bp Feature: domain Description: Bcp Location: 2102469-2102910 bp Feature: domain Description: Bcp Location: 21 02469-21 0291 0 bp Feature: gene Location: 2102943-2103599 bp Feature: domain Description: YqfA Location: 2102961-2103588 bp Feature: domain Description: YqfA Location: 21 02961 -21 03588 bp Feature: gene Location: 2343217-2343501 bp Feature: domain Description: DUF4134 Location: 2343301-2343478 bp Feature: domain Description: DUF41 34 Location: 2343301 -2343478 bp Feature: gene Location: 2344993-2345127 bp Feature: gene Location: 2345208-2346644 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2345541-2346159 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2345541 -23461 59 bp Feature: domain Description: GIIM Note: maturase Location: 2346213-2346432 bp Feature: domain Description: GIIM Note: maturase Location: 234621 3-2346432 bp Feature: gene Location: 2346859-2347386 bp Feature: domain Description: WYL Location: 2347222-2347366 bp Feature: domain Description: WYL Location: 2347222-2347366 bp Feature: gene Location: 2347386-2347775 bp Feature: domain Description: WYL Location: 2347392-2347749 bp Feature: domain Description: WYL Location: 2347392-2347749 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Peptidase_C10 (pfam01640), greA (TIGR01462), RVT-GII, GIIM (pfam08388), LptF_LptG, PRK09311 (bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II), Bac_rhamnosid_N (pfam08531), Bac_rhamnosid (pfam05592), Bac_rhamnosid6H (pfam17389), Bac_rhamnosid_C (pfam17390)
GlnA (TIGR00653), FadM (COG0824), POR (pfam01558), YicI (COG1501), DUF3467 (pfam11950), PRK00566 (DNA-directed RNA polymerase subunit beta'; Provisional), cysS (TIGR00435), OMP_b-brl_2 (pfam13568), PRK05912 (tyrosyl-tRNA synthetase; Validated), YidD (COG0759)
MPP_YbbF-LpxH (cd07398), CitT (pfam12431), PRK00180 (acetate kinase A/propionate kinase 2; Reviewed), eutD (PRK09653), CBM_4_9 (pfam02018), AbfA (COG3534), PRK05431 (seryl-tRNA synthetase; Provisional), PRK10808 (outer membrane protein A; Reviewed), OmpA (pfam00691), gltD (PRK12810)
TsaE (pfam02367), thioredoxin (TIGR01068), YjiL (COG1924), CoA_E_activ (TIGR00241), COG3580 (Predicted nucleotide-binding protein, sugar kinase/HSP70/actin superfamily ), Peptidase_C11 (pfam03415), PRK05222 (5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase; Provisional), PRK14031 (NADP-specific glutamate dehydrogenase), COG2509 (FAD-dependent dehydrogenase ), thrA (PRK09436)
Bac_Flav_CT_G (TIGR03783), DUF4133 (pfam13571), Intron_maturas2 (pfam01348), DUF4134 (pfam13572), SLR (sd00010), Peptidases_S8_9 (cd07493), rpmA (PRK05435), rplU (PRK05573), HTH_17 (pfam12728), AcrR (COG1309)
CarbopepD_reg_2 (pfam13715), ligand_gated_channel (cd01347), DUF5024 (pfam16427), chaperone_ClpB (TIGR03346), Bcp (COG1225), YqfA (COG4864), WYL (pfam13280)