myRT

myRT report for GCA_000218365.1_Bacteroides_sp_1_1_30_V1

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Seq: GL945106.1 Bacteroides sp. 1_1_30 genomic scaffold supercont1.17, whole genome shotgun sequence (148513 bp)
Overview 1 RT 1: 143140-148514 bp Neighborhood of RT #1 [143140, 148513] DUF4134 RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_G Feature: gene Location: 143140-143868 bp Feature: gene Location: 144067-144378 bp Feature: domain Description: DUF4134 Location: 144106-144373 bp Feature: domain Description: DUF41 34 Location: 1 441 06-1 44373 bp Feature: gene Location: 145003-146820 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 145267-146089 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 45267-1 46089 bp Feature: domain Description: Intron_maturas2 Location: 146164-146491 bp Feature: domain Description: Intron_maturas2 Location: 1 461 64-1 46491 bp Feature: domain Description: HNHc Note: nucleases Location: 146644-146794 bp Feature: domain Description: HNHc Note: nucleases Location: 1 46644-1 46794 bp Feature: gene Location: 147206-148513 bp Feature: domain Description: Bac_Flav_CT_G Location: 147209-148514 bp Feature: domain Description: Bac_Flav_CT_G Location: 1 47209-1 4851 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4134 (pfam13572), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), Bac_Flav_CT_G (TIGR03783)

Seq: GL945101.1 Bacteroides sp. 1_1_30 genomic scaffold supercont1.12, whole genome shotgun sequence (224626 bp)
Overview 1 RT 1: 219776-224043 bp Neighborhood of RT #1 [219776, 224057] DUF4141 Bac_Flav_CT_G RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_G Feature: gene Location: 219776-220408 bp Feature: domain Description: DUF4141 Location: 219800-219947 bp Feature: domain Description: DUF4141 Location: 2 19800-2 19947 bp Feature: gene Location: 220429-220887 bp Feature: domain Description: Bac_Flav_CT_G Location: 220447-220873 bp Feature: domain Description: Bac_Flav_CT_G Location: 2 2 0447-2 2 0873 bp Feature: gene Location: 220965-222776 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 221229-222051 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 2 12 2 9-2 2 2 051 bp Feature: domain Description: Intron_maturas2 Location: 222126-222441 bp Feature: domain Description: Intron_maturas2 Location: 2 2 2 12 6-2 2 2 441 bp Feature: domain Description: HNHc Note: nucleases Location: 222597-222747 bp Feature: domain Description: HNHc Note: nucleases Location: 2 2 2 597-2 2 2 747 bp Feature: gene Location: 223323-224057 bp Feature: domain Description: Bac_Flav_CT_G Location: 223326-224043 bp Feature: domain Description: Bac_Flav_CT_G Location: 2 2 332 6-2 2 4043 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4141 (pfam13605), Bac_Flav_CT_G (TIGR03783), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: GL945090.1 Bacteroides sp. 1_1_30 genomic scaffold supercont1.1, whole genome shotgun sequence (889073 bp)
Overview 1 RT 1: 156069-167411 bp Neighborhood of RT #1 [156069, 167449] Laminin_G_3 pfam08757 LRR_AMN1 RVT-DGRs Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like Feature: gene Location: 156069-157235 bp Feature: gene Location: 157245-164033 bp Feature: domain Description: Laminin_G_3 Location: 159681-160062 bp Feature: domain Description: Laminin_G_3 Location: 159681-160062 bp Feature: domain Description: pfam08757 Location: 160857-161181 bp Feature: domain Description: pfam08757 Location: 160857-161181 bp Feature: domain Description: LRR_AMN1 Location: 161787-162258 bp Feature: domain Description: LRR_AMN1 Location: 161787-162258 bp Feature: gene Location: 164464-165759 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 164674-165352 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 164674-1653 52 bp Feature: gene Location: 165761-166255 bp Feature: gene Location: 166304-167449 bp Feature: domain Description: Arm-DNA-bind_5 Location: 166328-166574 bp Feature: domain Description: Arm-DNA-bind_5 Location: 1663 28-166574 bp Feature: domain Description: Phage_int_SAM_5 Location: 166613-166898 bp Feature: domain Description: Phage_int_SAM_5 Location: 166613 -166898 bp Feature: domain Description: INTN1_C_like Location: 166937-167411 bp Feature: domain Description: INTN1_C_like Location: 16693 7-167411 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Laminin_G_3 (pfam13385), pfam08757 (CotH;CotH kinase protein), LRR_AMN1 (sd00034), RVT-DGRs, Arm-DNA-bind_5 (pfam17293), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185)

Seq: GL945096.1 Bacteroides sp. 1_1_30 genomic scaffold supercont1.7, whole genome shotgun sequence (344334 bp)
Overview 1 RT 1: 75962-78281 bp Neighborhood of RT #1 [75962, 78281] RVT-GII Feature: gene Location: 75962-76195 bp Feature: gene Location: 76232-76354 bp Feature: gene Location: 76600-76920 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 76603-76840 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 76603-7684 0 bp Feature: gene Location: 77788-77901 bp Feature: gene Location: 77907-78281 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: GL945114.1 Bacteroides sp. 1_1_30 genomic scaffold supercont1.25, whole genome shotgun sequence (13351 bp)
Overview 1 RT 1: 344-6227 bp 2 RT 2: 8838-12995 bp Neighborhood of RT #1 [344, 6559] N6_Mtase COG4646 matK RVT-GII Intron_maturas2 Neighborhood of RT #2 [8838, 13015] RVT_N RVT-GII GIIM HTH_ARAC Feature: gene Location: 344-3493 bp Feature: domain Description: N6_Mtase Location: 656-1256 bp Feature: domain Description: N6_Mtase Location: 65 6-125 6 bp Feature: domain Description: COG4646 Location: 2669-3446 bp Feature: domain Description: COG4646 Location: 2669-3446 bp Feature: gene Location: 3609-4204 bp Feature: gene Location: 4757-6559 bp Feature: domain Description: matK Location: 4826-4913 bp Feature: domain Description: matK Location: 4826-4913 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5021-5843 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5 021-5 843 bp Feature: domain Description: Intron_maturas2 Location: 5993-6227 bp Feature: domain Description: Intron_maturas2 Location: 5 993-6227 bp Feature: gene Location: 8838-10508 bp Feature: RT Description: RVT_N Location: 8892-9135 bp Feature: RT Description: RVT_N Location: 8892-9135 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9180-9828 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9180-9828 bp Feature: domain Description: GIIM Note: maturase Location: 9882-10113 bp Feature: domain Description: GIIM Note: maturase Location: 9882-10113 bp Feature: gene Location: 12161-13015 bp Feature: domain Description: HTH_ARAC Location: 12749-12995 bp Feature: domain Description: HTH_ARAC Location: 12749-12995 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_ARAC (smart00342), N6_Mtase (pfam02384), COG4646 (Adenine-specific DNA methylase, N12 class ), matK (CHL00002), RVT-GII, Intron_maturas2 (pfam01348), RVT_N (pfam13655), GIIM (pfam08388)

Seq: GL945112.1 Bacteroides sp. 1_1_30 genomic scaffold supercont1.23, whole genome shotgun sequence (16174 bp)
Overview 1 RT 1: 11051-15112 bp Neighborhood of RT #1 [11051, 15171] Bac_Flav_CT_J RVT-GII matK HNHc DUF4141 Feature: gene Location: 11051-12055 bp Feature: domain Description: Bac_Flav_CT_J Location: 11057-12026 bp Feature: domain Description: Bac_Flav_CT_J Location: 11057-12026 bp Feature: gene Location: 12059-12595 bp Feature: gene Location: 12588-14393 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12852-13674 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12852-136 74 bp Feature: domain Description: matK Location: 13848-14064 bp Feature: domain Description: matK Location: 13848-1406 4 bp Feature: domain Description: HNHc Note: nucleases Location: 14226-14367 bp Feature: domain Description: HNHc Note: nucleases Location: 14226 -1436 7 bp Feature: gene Location: 14825-14965 bp Feature: gene Location: 14944-15171 bp Feature: domain Description: DUF4141 Location: 14956-15112 bp Feature: domain Description: DUF4141 Location: 14956 -15112 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Bac_Flav_CT_J (TIGR03782), RVT-GII, matK (CHL00002), HNHc (smart00507), DUF4141 (pfam13605)

Seq: GL945107.1 Bacteroides sp. 1_1_30 genomic scaffold supercont1.18, whole genome shotgun sequence (122752 bp)
Overview 1 RT 1: 95594-107974 bp Neighborhood of RT #1 [95594, 108105] PDDEXK_2 RVT-Retrons DUF4011 DEXXQc_SF1 DEXXQc_SF1 KOG1803 MTES_1575 DUF3320 rpsA Feature: gene Location: 95594-96418 bp Feature: domain Description: PDDEXK_2 Location: 95615-96293 bp Feature: domain Description: PDDEXK_2 Location: 95615-96293 bp Feature: gene Location: 96683-98794 bp Feature: gene Location: 99002-100132 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 99323-99866 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 99323-99866 bp Feature: gene Location: 100183-106209 bp Feature: domain Description: DUF4011 Location: 101413-101926 bp Feature: domain Description: DUF4011 Location: 101413-101926 bp Feature: domain Description: DEXXQc_SF1 Location: 102265-102694 bp Feature: domain Description: DEXXQc_SF1 Location: 102265-102694 bp Feature: domain Description: DEXXQc_SF1 Location: 103693-104452 bp Feature: domain Description: DEXXQc_SF1 Location: 103693-104452 bp Feature: domain Description: KOG1803 Location: 104587-104965 bp Feature: domain Description: KOG1803 Location: 104587 -104965 bp Feature: domain Description: MTES_1575 Location: 105124-105409 bp Feature: domain Description: MTES_157 5 Location: 105124-105409 bp Feature: domain Description: DUF3320 Location: 105724-105859 bp Feature: domain Description: DUF3320 Location: 1057 24-105859 bp Feature: gene Location: 106306-108105 bp Feature: domain Description: rpsA Location: 106375-107974 bp Feature: domain Description: rpsA Location: 10637 5-107 97 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), KOG1803 (KOG1803, DNA helicase ), MTES_1575 (pfam18741), DUF3320 (pfam11784), PDDEXK_2 (pfam12784), RVT-Retrons

Seq: GL945094.1 Bacteroides sp. 1_1_30 genomic scaffold supercont1.5, whole genome shotgun sequence (440094 bp)
Overview 1 RT 1: 237972-241908 bp Neighborhood of RT #1 [237972, 241908] RVT-DGRs Feature: gene Location: 237972-238250 bp Feature: gene Location: 238260-239621 bp Feature: gene Location: 239953-241140 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 240283-240982 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 24028 3-24098 2 bp Feature: gene Location: 241103-241531 bp Feature: gene Location: 241528-241908 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs