myRT

myRT report for GCA_000218405.2_Lach_bact_3-1-57FAA_CT1_V1

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Seq: KE150406.1 Lachnospiraceae bacterium 3_1_57FAA_CT1 genomic scaffold acsNU-supercont1.2, whole genome shotgun sequence (1273477 bp)
Overview 1 RT 1: 300780-309103 bp 2 RT 2: 1045046-1051346 bp Neighborhood of RT #1 [300780, 309117] VirD4 RVT-GII HNHc T4SS-DNA_transf RVT-GII Intron_maturas2 HNHc DUF3801 Neighborhood of RT #2 [1045046, 1051354] tRNA_anti_2 RVT-Retrons List_Bact_rpt DAP-DH Feature: gene Location: 300780-301085 bp Feature: gene Location: 301602-302552 bp Feature: domain Description: VirD4 Location: 301659-302454 bp Feature: domain Description: VirD4 Location: 301 659-302454 bp Feature: gene Location: 302658-304457 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 302937-303645 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 302937-303645 bp Feature: domain Description: HNHc Note: nucleases Location: 304266-304371 bp Feature: domain Description: HNHc Note: nucleases Location: 304266-304371 bp Feature: gene Location: 305164-305646 bp Feature: domain Description: T4SS-DNA_transf Location: 305335-305632 bp Feature: domain Description: T4SS-DNA_transf Location: 305335-305632 bp Feature: gene Location: 305737-307554 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 306001-306820 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 306001 -306820 bp Feature: domain Description: Intron_maturas2 Location: 306892-307195 bp Feature: domain Description: Intron_maturas2 Location: 306892-3071 95 bp Feature: domain Description: HNHc Note: nucleases Location: 307375-307519 bp Feature: domain Description: HNHc Note: nucleases Location: 307375-30751 9 bp Feature: gene Location: 308114-308620 bp Feature: gene Location: 308617-309117 bp Feature: domain Description: DUF3801 Location: 308707-309103 bp Feature: domain Description: DUF3801 Location: 308707-3091 03 bp Feature: gene Location: 1045046-1045627 bp Feature: domain Description: tRNA_anti_2 Location: 1045349-1045592 bp Feature: domain Description: tRNA_anti_2 Location: 1 045349-1 045592 bp Feature: gene Location: 1045728-1046027 bp Feature: gene Location: 1046062-1047045 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1046230-1046785 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 046230-1 046785 bp Feature: gene Location: 1047601-1050513 bp Feature: domain Description: List_Bact_rpt Location: 1050028-1050145 bp Feature: domain Description: List_Bact_rpt Location: 1 050028-1 0501 45 bp Feature: gene Location: 1050368-1051354 bp Feature: domain Description: DAP-DH Location: 1050374-1051346 bp Feature: domain Description: DAP-DH Location: 1 050374-1 051 346 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT VirD4 (COG3505), RVT-GII, HNHc (smart00507), T4SS-DNA_transf (pfam02534), Intron_maturas2 (pfam01348), DUF3801 (pfam12687), tRNA_anti_2 (pfam13742), RVT-Retrons, List_Bact_rpt (TIGR02543), DAP-DH (TIGR01921)

Seq: KE150405.1 Lachnospiraceae bacterium 3_1_57FAA_CT1 genomic scaffold acsNU-supercont1.1, whole genome shotgun sequence (4263893 bp)
Overview 1 RT 1: 711122-716945 bp 2 RT 2: 1060039-1067939 bp 3 RT 3: 1603213-1612221 bp Neighborhood of RT #1 [711122, 716945] type_I_hlyD type_I_hlyD RluA RVT-GII GIIM Neighborhood of RT #2 [1060039, 1067944] DUF3801 VirD4 RVT-GII Intron_maturas2 HNHc T4SS-DNA_transf RVT-GII HNHc TraG-D_C Maff2 Neighborhood of RT #3 [1603213, 1612221] VOC_like Acetyltransf_3 RVT-GII GIIM AAA_22 Feature: gene Location: 711122-712705 bp Feature: domain Description: type_I_hlyD Location: 711386-711707 bp Feature: domain Description: type_I_hlyD Location: 711386-711707 bp Feature: domain Description: type_I_hlyD Location: 711992-712604 bp Feature: domain Description: type_I_hlyD Location: 711992 -712 604 bp Feature: gene Location: 712978-713997 bp Feature: domain Description: RluA Location: 713143-713974 bp Feature: domain Description: RluA Location: 713143-713974 bp Feature: gene Location: 714071-715468 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 714392-715019 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 714392 -715019 bp Feature: domain Description: GIIM Note: maturase Location: 715073-715301 bp Feature: domain Description: GIIM Note: maturase Location: 715073-715301 bp Feature: gene Location: 715989-716324 bp Feature: gene Location: 716391-716945 bp Feature: gene Location: 1060039-1060509 bp Feature: domain Description: DUF3801 Location: 1060105-1060399 bp Feature: domain Description: DUF3801 Location: 1060105-1060399 bp Feature: gene Location: 1060506-1061012 bp Feature: domain Description: VirD4 Location: 1060740-1060989 bp Feature: domain Description: VirD4 Location: 1060740-1060989 bp Feature: gene Location: 1061572-1063389 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1061836-1062655 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1061836-1062 655 bp Feature: domain Description: Intron_maturas2 Location: 1062727-1063030 bp Feature: domain Description: Intron_maturas2 Location: 1062 72 7-1063030 bp Feature: domain Description: HNHc Note: nucleases Location: 1063210-1063354 bp Feature: domain Description: HNHc Note: nucleases Location: 10632 10-1063354 bp Feature: gene Location: 1063480-1063962 bp Feature: domain Description: T4SS-DNA_transf Location: 1063651-1063936 bp Feature: domain Description: T4SS-DNA_transf Location: 1063651-1063936 bp Feature: gene Location: 1064669-1066468 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1064948-1065656 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1064948-1065656 bp Feature: domain Description: HNHc Note: nucleases Location: 1066277-1066382 bp Feature: domain Description: HNHc Note: nucleases Location: 10662 77-1066382 bp Feature: gene Location: 1066574-1067542 bp Feature: domain Description: TraG-D_C Location: 1066967-1067321 bp Feature: domain Description: TraG-D_C Location: 1066967-106732 1 bp Feature: gene Location: 1067786-1067944 bp Feature: domain Description: Maff2 Location: 1067789-1067939 bp Feature: domain Description: Maff2 Location: 1067789-1067939 bp Feature: gene Location: 1603213-1603557 bp Feature: domain Description: VOC_like Location: 1603234-1603549 bp Feature: domain Description: VOC_like Location: 16032 34-1603549 bp Feature: gene Location: 1603638-1604162 bp Feature: domain Description: Acetyltransf_3 Location: 1603671-1604082 bp Feature: domain Description: Acetyltransf_3 Location: 1603671-1604082 bp Feature: gene Location: 1604301-1605599 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1604556-1605246 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1604556-16052 46 bp Feature: domain Description: GIIM Note: maturase Location: 1605330-1605531 bp Feature: domain Description: GIIM Note: maturase Location: 1605330-1605531 bp Feature: gene Location: 1606113-1612031 bp Feature: domain Description: AAA_22 Location: 1606986-1607448 bp Feature: domain Description: AAA_2 2 Location: 1606986-1607448 bp Feature: gene Location: 1611979-1612221 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT type_I_hlyD (TIGR01843), RluA (COG0564), RVT-GII, GIIM (pfam08388), DUF3801 (pfam12687), VirD4 (COG3505), Intron_maturas2 (pfam01348), HNHc (smart00507), T4SS-DNA_transf (pfam02534), TraG-D_C (pfam12696)
Maff2 (pfam12750), VOC_like (cd16355), Acetyltransf_3 (pfam13302), AAA_22 (pfam13401)

Seq: KE150408.1 Lachnospiraceae bacterium 3_1_57FAA_CT1 genomic scaffold acsNU-supercont1.4, whole genome shotgun sequence (825043 bp)
Overview 1 RT 1: 258002-261334 bp Neighborhood of RT #1 [258002, 261366] RVT-GII GIIM SUKH_5 SUKH_5 DUF3791 Feature: gene Location: 258002-258523 bp Feature: gene Location: 258528-258668 bp Feature: gene Location: 258695-259993 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 258950-259640 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 258950-259640 bp Feature: domain Description: GIIM Note: maturase Location: 259724-259925 bp Feature: domain Description: GIIM Note: maturase Location: 259724-259925 bp Feature: gene Location: 260484-261032 bp Feature: domain Description: SUKH_5 Location: 260556-260640 bp Feature: domain Description: SUKH_5 Location: 260556-260640 bp Feature: domain Description: SUKH_5 Location: 260739-260922 bp Feature: domain Description: SUKH_5 Location: 26073 9-260922 bp Feature: gene Location: 261145-261366 bp Feature: domain Description: DUF3791 Location: 261190-261334 bp Feature: domain Description: DUF3 791 Location: 261190-2613 3 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), SUKH_5 (pfam14567), DUF3791 (pfam12668)

Seq: KE150409.1 Lachnospiraceae bacterium 3_1_57FAA_CT1 genomic scaffold acsNU-supercont1.5, whole genome shotgun sequence (184717 bp)
Overview 1 RT 1: 22773-31569 bp Neighborhood of RT #1 [22773, 31583] TnpV SR_TndX_transposase Recombinase Zn_ribbon_recom DUF4368 RVT-GII HNHc T4SS-DNA_transf RVT-GII Intron_maturas2 HNHc DUF3801 Feature: gene Location: 22773-22907 bp Feature: domain Description: TnpV Location: 22785-22884 bp Feature: domain Description: TnpV Location: 22785-22884 bp Feature: gene Location: 22904-24790 bp Feature: domain Description: SR_TndX_transposase Location: 22928-23357 bp Feature: domain Description: SR_TndX_transposase Location: 22928-23357 bp Feature: domain Description: Recombinase Location: 23453-23813 bp Feature: domain Description: Recombinase Location: 234 53-23813 bp Feature: domain Description: Zn_ribbon_recom Location: 23858-24044 bp Feature: domain Description: Zn_ribbon_recom Location: 23858-24 04 4 bp Feature: domain Description: DUF4368 Location: 24320-24515 bp Feature: domain Description: DUF4 368 Location: 24 320-24 515 bp Feature: gene Location: 25124-26923 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25403-26111 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 254 03-26111 bp Feature: domain Description: HNHc Note: nucleases Location: 26732-26837 bp Feature: domain Description: HNHc Note: nucleases Location: 26732-26837 bp Feature: gene Location: 27630-28028 bp Feature: domain Description: T4SS-DNA_transf Location: 27717-28014 bp Feature: domain Description: T4 SS-DNA_transf Location: 27717-28014 bp Feature: gene Location: 28203-30020 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28467-29286 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 284 67-29286 bp Feature: domain Description: Intron_maturas2 Location: 29358-29661 bp Feature: domain Description: Intron_maturas2 Location: 29358-29661 bp Feature: domain Description: HNHc Note: nucleases Location: 29841-29985 bp Feature: domain Description: HNHc Note: nucleases Location: 2984 1-29985 bp Feature: gene Location: 30580-31086 bp Feature: gene Location: 31083-31583 bp Feature: domain Description: DUF3801 Location: 31152-31569 bp Feature: domain Description: DUF3801 Location: 31152-31569 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TnpV (pfam14198), SR_TndX_transposase (cd03770), Recombinase (pfam07508), Zn_ribbon_recom (pfam13408), DUF4368 (pfam14287), RVT-GII, HNHc (smart00507), T4SS-DNA_transf (pfam02534), Intron_maturas2 (pfam01348), DUF3801 (pfam12687)