myRT

myRT report for GCA_000218485.2_ASM21848v2

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Seq: AFPB01000170.1 Aquimarina agarivorans strain HQM9 contig176, whole genome shotgun sequence (36664 bp)
Overview 1 RT 1: 16518-19972 bp Neighborhood of RT #1 [16518, 19972] DUF3408 RVT-Retrons HTH_45 Feature: gene Location: 16518-16925 bp Feature: domain Description: DUF3408 Location: 16539-16905 bp Feature: domain Description: DUF3408 Location: 1 6539-1 6905 bp Feature: gene Location: 16929-17522 bp Feature: gene Location: 17613-18641 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 17841-18390 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 7841 -1 8390 bp Feature: gene Location: 18807-19088 bp Feature: domain Description: HTH_45 Location: 18843-18978 bp Feature: domain Description: HTH_45 Location: 1 8843-1 8978 bp Feature: gene Location: 19118-19972 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3408 (pfam11888), RVT-Retrons, HTH_45 (pfam14947)

Seq: AFPB01000153.1 Aquimarina agarivorans strain HQM9 contig159, whole genome shotgun sequence (37385 bp)
Overview 1 RT 1: 32471-36969 bp Neighborhood of RT #1 [32471, 37007] YciA SrmB RVT-GII DUF4874 DUF4832 Por_Secre_tail Feature: gene Location: 32471-32863 bp Feature: domain Description: YciA Location: 32489-32822 bp Feature: domain Description: YciA Location: 32 489-32 82 2 bp Feature: gene Location: 32906-34015 bp Feature: domain Description: SrmB Location: 32909-33992 bp Feature: domain Description: SrmB Location: 32 909-33992 bp Feature: gene Location: 34144-34902 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34192-34855 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34192 -34855 bp Feature: gene Location: 34915-35055 bp Feature: gene Location: 35298-37007 bp Feature: domain Description: DUF4874 Location: 35424-35952 bp Feature: domain Description: DUF4874 Location: 3542 4-35952 bp Feature: domain Description: DUF4832 Location: 36027-36651 bp Feature: domain Description: DUF4832 Location: 3602 7-36651 bp Feature: domain Description: Por_Secre_tail Location: 36756-36969 bp Feature: domain Description: Por_Secre_tail Location: 36756-36969 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YciA (COG1607), SrmB (COG0513), RVT-GII, DUF4874 (pfam16173), DUF4832 (pfam16116), Por_Secre_tail (TIGR04183)