myRT

myRT report for GCA_000219565.1_ASM21956v1

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Seq: GL949755.1 Halomonas sp. TD01 genomic scaffold GME_scaffold2, whole genome shotgun sequence (699337 bp)
Overview 1 RT 1: 323216-326374 bp Neighborhood of RT #1 [323216, 326374] Tra5 RVT-GII Feature: gene Location: 323216-324079 bp Feature: domain Description: Tra5 Location: 323267-324026 bp Feature: domain Description: Tra5 Location: 323267-324026 bp Feature: gene Location: 324253-324375 bp Feature: gene Location: 324372-324791 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 324576-324765 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 324576-324765 bp Feature: gene Location: 325070-325270 bp Feature: gene Location: 325763-326374 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-GII

Seq: GL949760.1 Halomonas sp. TD01 genomic scaffold GME_scaffold7, whole genome shotgun sequence (269313 bp)
Overview 1 RT 1: 236856-240139 bp Neighborhood of RT #1 [236856, 240180] RVT-DGRs Avd_like Feature: gene Location: 236856-237845 bp Feature: gene Location: 237939-238466 bp Feature: gene Location: 238447-239511 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 238654-239344 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2 38654-2 39344 bp Feature: gene Location: 239604-239792 bp Feature: gene Location: 239815-240180 bp Feature: domain Description: Avd_like Location: 239839-240139 bp Feature: domain Description: Avd_like Location: 2 39839-2 40139 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Avd_like (cd16376)

Seq: GL949761.1 Halomonas sp. TD01 genomic scaffold GME_scaffold8, whole genome shotgun sequence (242498 bp)
Overview 1 RT 1: 163928-169618 bp Neighborhood of RT #1 [163928, 169623] PRK15114 RVT_N RVT-GII GIIM HNH groEL groES Feature: gene Location: 163928-164662 bp Feature: domain Description: PRK15114 Location: 163934-164645 bp Feature: domain Description: PRK15114 Location: 163 93 4-164645 bp Feature: gene Location: 164621-164755 bp Feature: gene Location: 164904-166649 bp Feature: RT Description: RVT_N Location: 165012-165249 bp Feature: RT Description: RVT_N Location: 165012-165249 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 165300-165945 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1653 00-165945 bp Feature: domain Description: GIIM Note: maturase Location: 165999-166230 bp Feature: domain Description: GIIM Note: maturase Location: 165999-16623 0 bp Feature: domain Description: HNH Note: nucleases Location: 166470-166608 bp Feature: domain Description: HNH Note: nucleases Location: 166470-166608 bp Feature: gene Location: 167628-169271 bp Feature: domain Description: groEL Location: 167634-169254 bp Feature: domain Description: groEL Location: 16763 4-169254 bp Feature: gene Location: 169330-169623 bp Feature: domain Description: groES Location: 169333-169618 bp Feature: domain Description: groES Location: 1693 3 3 -169618 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK15114 (tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ; Provisional), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), groEL (PRK12852), groES (PRK14533)