myRT

myRT report for GCA_000219945.2_ASM21994v2

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Seq: AFQK01000042.1 Klebsiella pneumoniae JH1 contig00067, whole genome shotgun sequence (38658 bp)
Overview 1 RT 1: 541-5417 bp Neighborhood of RT #1 [541, 5437] RVT-Retrons AAA_15 AAA_15 COG2958 Feature: gene Location: 541-1641 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 682-1243 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 682-1 243 bp Feature: gene Location: 1814-3955 bp Feature: domain Description: AAA_15 Location: 1841-2258 bp Feature: domain Description: AAA_1 5 Location: 1 841 -2258 bp Feature: domain Description: AAA_15 Location: 2396-2822 bp Feature: domain Description: AAA_1 5 Location: 2396-2822 bp Feature: gene Location: 4505-5437 bp Feature: domain Description: COG2958 Location: 4523-5417 bp Feature: domain Description: COG2958 Location: 4523-541 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, AAA_15 (pfam13175), COG2958 (Uncharacterized protein )

Seq: AFQK01000021.1 Klebsiella pneumoniae JH1 contig00027, whole genome shotgun sequence (173458 bp)
Overview 1 RT 1: 32080-38933 bp Neighborhood of RT #1 [32080, 38950] INT_P4_C Integrase_1 RVT-UG4 FimD FimC Feature: gene Location: 32080-32745 bp Feature: domain Description: INT_P4_C Location: 32185-32743 bp Feature: domain Description: INT_P4_C Location: 32 185-32 743 bp Feature: gene Location: 33006-33446 bp Feature: domain Description: Integrase_1 Location: 33012-33228 bp Feature: domain Description: Integrase_1 Location: 33012 -332 2 8 bp Feature: gene Location: 33503-35581 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 33911-34355 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 33911-34355 bp Feature: gene Location: 35581-38190 bp Feature: domain Description: FimD Location: 35638-38179 bp Feature: domain Description: FimD Location: 35638-38179 bp Feature: gene Location: 38222-38950 bp Feature: domain Description: FimC Location: 38270-38933 bp Feature: domain Description: FimC Location: 382 70-38933 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT INT_P4_C (cd00801), Integrase_1 (pfam12835), RVT-UG4, FimD (COG3188), FimC (COG3121)