myRT

myRT report for GCA_000220335.1_ASM22033v1

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Seq: GL982998.1 Sporosarcina newyorkensis 2681 genomic scaffold SCAFFOLD2, whole genome shotgun sequence (909010 bp)
Overview 1 RT 1: 550623-555651 bp Neighborhood of RT #1 [550623, 555651] DUF4164 RVT-DGRs Avd_like Feature: gene Location: 550623-550826 bp Ori: EGQ21302.1 Feature: domain Description: DUF4164 Location: 550662-550806 bp Feature: domain Description: DUF41 64 Location: 550662-550806 bp Feature: gene Location: 550838-553162 bp Feature: gene Location: 553569-554654 bp Ori: EGQ21058.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 553791-554448 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 553791 -554448 bp Feature: gene Location: 554915-555256 bp Ori: EGQ21059.1 Feature: domain Description: Avd_like Location: 554939-555248 bp Feature: domain Description: Avd_like Location: 554939-555248 bp Feature: gene Location: 555283-555651 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4164 (pfam13747), RVT-DGRs, Avd_like (cd16376)

Seq: GL982999.1 Sporosarcina newyorkensis 2681 genomic scaffold SCAFFOLD3, whole genome shotgun sequence (954874 bp)
Overview 1 RT 1: 118969-123718 bp 2 RT 2: 828571-840965 bp Neighborhood of RT #1 [118969, 123718] YfeH MATE_like_8 RVT-GII GIIM Neighborhood of RT #2 [828571, 840997] YeeA YeeA YeeA RVT-UNC TIGR02687 Feature: gene Location: 118969-119919 bp Ori: EGQ26065.1 Feature: domain Description: YfeH Location: 119008-119884 bp Feature: domain Description: YfeH Location: 119008-119884 bp Feature: gene Location: 120115-121518 bp Ori: EGQ26066.1 Feature: domain Description: MATE_like_8 Location: 120151-121456 bp Feature: domain Description: MATE_like_8 Location: 12 0151-12 1456 bp Feature: gene Location: 121731-122993 bp Ori: EGQ26067.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 121929-122544 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 192 9-12 2 544 bp Feature: domain Description: GIIM Note: maturase Location: 122595-122805 bp Feature: domain Description: GIIM Note: maturase Location: 12 2 595-12 2 805 bp Feature: gene Location: 123087-123323 bp Feature: gene Location: 123596-123718 bp Feature: gene Location: 828571-832143 bp Feature: gene Location: 832155-835646 bp Ori: EGQ23776.1 Feature: domain Description: YeeA Location: 832770-833247 bp Feature: domain Description: YeeA Location: 832 770-8332 47 bp Feature: domain Description: YeeA Location: 833565-834813 bp Feature: domain Description: YeeA Location: 833565-834813 bp Feature: domain Description: YeeA Location: 835068-835605 bp Feature: domain Description: YeeA Location: 835068-835605 bp Feature: gene Location: 835752-836380 bp Ori: EGQ23777.1 Feature: RT Description: RVT-UNC Note: UNC RT Location: 836142-836379 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 836142 -836379 bp Feature: gene Location: 837296-838215 bp Feature: gene Location: 838439-840997 bp Ori: EGQ23767.1 Feature: domain Description: TIGR02687 Location: 838499-840965 bp Feature: domain Description: TIGR02 687 Location: 838499-840965 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YfeH (COG0385), MATE_like_8 (cd13134), RVT-GII, GIIM (pfam08388), YeeA (COG1002), RVT-UG8/RVT-UG12/RVT-AbiP2/RVT-UG15(RVT-UNC), TIGR02687 (TIGR02687 family protein)

Seq: GL982997.1 Sporosarcina newyorkensis 2681 genomic scaffold SCAFFOLD1, whole genome shotgun sequence (1789303 bp)
Overview 1 RT 1: 866546-868969 bp 2 RT 2: 1746423-1751105 bp Neighborhood of RT #1 [866546, 868969] COG3464 RVT-GII group_II_RT_mat Neighborhood of RT #2 [1746423, 1751116] HEPN_Apea RVT-GII 2A0121 MFS_MefA_like Feature: gene Location: 866546-866845 bp Ori: EGQ27070.1 Feature: domain Description: COG3464 Location: 866720-866828 bp Feature: domain Description: COG3 464 Location: 866720-866828 bp Feature: gene Location: 866925-867293 bp Feature: gene Location: 867290-867895 bp Ori: EGQ27072.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 867293-867785 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 867293 -867785 bp Feature: gene Location: 868078-868377 bp Ori: EGQ27073.1 Feature: domain Description: group_II_RT_mat Note: maturase Location: 868201-868348 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 868201-8683 48 bp Feature: gene Location: 868688-868969 bp Feature: gene Location: 1746423-1747160 bp Ori: EGQ26221.1 Feature: domain Description: HEPN_Apea Location: 1746441-1746642 bp Feature: domain Description: HEPN_Apea Location: 1746441-1746642 bp Feature: gene Location: 1748398-1749354 bp Ori: EGQ26222.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1748665-1749280 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1748665-1749280 bp Feature: gene Location: 1749927-1750547 bp Ori: EGQ26223.1 Feature: domain Description: 2A0121 Location: 1749957-1750518 bp Feature: domain Description: 2A0121 Location: 1749957-1750518 bp Feature: gene Location: 1750544-1751116 bp Ori: EGQ26224.1 Feature: domain Description: MFS_MefA_like Location: 1750550-1751105 bp Feature: domain Description: MFS_MefA_like Location: 1750550-1751105 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3464 (Transposase ), RVT-GII, group_II_RT_mat (TIGR04416), HEPN_Apea (pfam18739), 2A0121 (TIGR00900), MFS_MefA_like (cd06173)