myRT

myRT report for GCA_000221325.2_ASM22132v2

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Seq: AEXT01000002.1 Streptococcus agalactiae FSL S3-026 contig02, whole genome shotgun sequence (388359 bp)
Overview 1 RT 1: 1590-6107 bp 2 RT 2: 320380-325827 bp Neighborhood of RT #1 [1590, 6130] NTP_transf_6 DUF2992 RVT-GII GIIM PRK08295 PhoE Neighborhood of RT #2 [320380, 325841] DeoR CelC RVT_N RVT-GII GIIM CelA CelB Feature: gene Location: 1590-2141 bp Feature: domain Description: NTP_transf_6 Location: 1650-2130 bp Feature: domain Description: NTP_transf_6 Location: 1 650-21 30 bp Feature: gene Location: 2361-2780 bp Feature: domain Description: DUF2992 Location: 2370-2778 bp Feature: domain Description: DUF2992 Location: 2370-2778 bp Feature: gene Location: 3344-4621 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3548-4163 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3548-41 63 bp Feature: domain Description: GIIM Note: maturase Location: 4217-4433 bp Feature: domain Description: GIIM Note: maturase Location: 421 7-4433 bp Feature: gene Location: 4837-5316 bp Feature: domain Description: PRK08295 Location: 4852-4966 bp Feature: domain Description: PRK08295 Location: 4852-4966 bp Feature: gene Location: 5438-6130 bp Feature: domain Description: PhoE Location: 5447-6107 bp Feature: domain Description: PhoE Location: 5447-61 07 bp Feature: gene Location: 320380-321363 bp Feature: domain Description: DeoR Location: 320389-321325 bp Feature: domain Description: DeoR Location: 320389-321 325 bp Feature: gene Location: 321567-321809 bp Feature: domain Description: CelC Location: 321585-321795 bp Feature: domain Description: CelC Location: 321 585-321 795 bp Feature: gene Location: 321881-323554 bp Feature: RT Description: RVT_N Location: 321953-322193 bp Feature: RT Description: RVT_N Location: 321 953-3221 93 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 322241-322901 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 322241 -322901 bp Feature: domain Description: GIIM Note: maturase Location: 322970-323189 bp Feature: domain Description: GIIM Note: maturase Location: 322970-3231 89 bp Feature: gene Location: 324218-324538 bp Feature: domain Description: CelA Location: 324221-324518 bp Feature: domain Description: CelA Location: 324221 -32451 8 bp Feature: gene Location: 324540-325841 bp Feature: domain Description: CelB Location: 324546-325827 bp Feature: domain Description: CelB Location: 324546-325827 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NTP_transf_6 (pfam06042), DUF2992 (pfam11208), RVT-GII, GIIM (pfam08388), PRK08295 (RNA polymerase sporulation sigma factor SigH), PhoE (COG0406), DeoR (COG2390), CelC (COG1447), RVT_N (pfam13655), CelA (TIGR03030)
CelB (COG1455)

Seq: AEXT01000008.1 Streptococcus agalactiae FSL S3-026 contig08, whole genome shotgun sequence (740830 bp)
Overview 1 RT 1: 8298-13723 bp 2 RT 2: 657367-663942 bp Neighborhood of RT #1 [8298, 13785] PBP2_GlnP PBP2_GlnP HisM GlnQ RVT-GII GIIM Transposase_mut Neighborhood of RT #2 [657367, 663942] Phage_int_SAM_3 INT_ICEBs1_C_like TerB_N RVT-GII GIIM Transposase_mut Feature: gene Location: 8298-10481 bp Feature: domain Description: PBP2_GlnP Location: 8382-9036 bp Feature: domain Description: PBP2 _GlnP Location: 8382 -9036 bp Feature: domain Description: PBP2_GlnP Location: 9114-9765 bp Feature: domain Description: PBP2 _GlnP Location: 9114-9765 bp Feature: domain Description: HisM Location: 9834-10479 bp Feature: domain Description: HisM Location: 9834-10479 bp Feature: gene Location: 10481-11221 bp Feature: domain Description: GlnQ Location: 10499-11210 bp Feature: domain Description: GlnQ Location: 10499-112 10 bp Feature: gene Location: 11771-13048 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11975-12590 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11975-12 590 bp Feature: domain Description: GIIM Note: maturase Location: 12644-12860 bp Feature: domain Description: GIIM Note: maturase Location: 12 644-12 860 bp Feature: gene Location: 13228-13515 bp Feature: gene Location: 13549-13785 bp Feature: domain Description: Transposase_mut Location: 13555-13723 bp Feature: domain Description: Transposase_mut Location: 13555-1372 3 bp Feature: gene Location: 657367-658632 bp Feature: domain Description: Phage_int_SAM_3 Location: 657607-657778 bp Feature: domain Description: Phage_int_SAM_3 Location: 657607-657778 bp Feature: domain Description: INT_ICEBs1_C_like Location: 658000-658561 bp Feature: domain Description: INT_ICEBs1_C_like Location: 658000-658561 bp Feature: gene Location: 659062-660051 bp Feature: domain Description: TerB_N Location: 659242-659638 bp Feature: domain Description: TerB_N Location: 6592 42 -659638 bp Feature: gene Location: 660547-661824 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 660751-661366 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 660751-661366 bp Feature: domain Description: GIIM Note: maturase Location: 661420-661636 bp Feature: domain Description: GIIM Note: maturase Location: 66142 0-661636 bp Feature: gene Location: 662530-663705 bp Feature: domain Description: Transposase_mut Location: 662551-663640 bp Feature: domain Description: Transposase_mut Location: 662 551-663640 bp Feature: gene Location: 663790-663942 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GlnQ (COG1126), RVT-GII, GIIM (pfam08388), Transposase_mut (pfam00872), PBP2_GlnP (cd13619), HisM (COG0765), Phage_int_SAM_3 (pfam14659), INT_ICEBs1_C_like (cd01189), TerB_N (pfam13208)

Seq: AEXT01000006.1 Streptococcus agalactiae FSL S3-026 contig06, whole genome shotgun sequence (249707 bp)
Overview 1 RT 1: 32175-38376 bp 2 RT 2: 71407-79474 bp 3 RT 3: 130405-136978 bp Neighborhood of RT #1 [32175, 38381] McsA ClpA YkuJ RVT-GII GIIM HisM GlnQ Neighborhood of RT #2 [71407, 79488] PRK08643 COG3666 DDE_Tnp_1_6 RVT-GII GIIM PRK07246 PRK05764 Neighborhood of RT #3 [130405, 136978] PrgI TraC-F-type TraC-F-type RVT_N RVT-GII GIIM TraC-F-type Feature: gene Location: 32175-34436 bp Feature: domain Description: McsA Location: 32178-32277 bp Feature: domain Description: McsA Location: 3 2178-3 2277 bp Feature: domain Description: ClpA Location: 32475-34389 bp Feature: domain Description: ClpA Location: 3 2475-3 43 89 bp Feature: gene Location: 34734-34964 bp Feature: domain Description: YkuJ Location: 34740-34962 bp Feature: domain Description: YkuJ Location: 3 4740-3 4962 bp Feature: gene Location: 35513-36790 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35717-36332 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 5717-3 63 3 2 bp Feature: domain Description: GIIM Note: maturase Location: 36386-36602 bp Feature: domain Description: GIIM Note: maturase Location: 3 63 86-3 6602 bp Feature: gene Location: 36962-37654 bp Feature: domain Description: HisM Location: 36971-37631 bp Feature: domain Description: HisM Location: 3 6971-3 763 1 bp Feature: gene Location: 37647-38381 bp Feature: domain Description: GlnQ Location: 37662-38376 bp Feature: domain Description: GlnQ Location: 3 7662-3 83 76 bp Feature: gene Location: 71407-72171 bp Feature: domain Description: PRK08643 Location: 71410-72169 bp Feature: domain Description: PRK08643 Location: 71410-72169 bp Feature: gene Location: 72203-73654 bp Feature: domain Description: COG3666 Location: 72215-72692 bp Feature: domain Description: COG3 666 Location: 72215-72692 bp Feature: domain Description: DDE_Tnp_1_6 Location: 73166-73520 bp Feature: domain Description: DDE_Tnp_1_6 Location: 73 166-73 520 bp Feature: gene Location: 74300-75577 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 74504-75119 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 74504-75119 bp Feature: domain Description: GIIM Note: maturase Location: 75173-75389 bp Feature: domain Description: GIIM Note: maturase Location: 75173 -753 89 bp Feature: gene Location: 75744-78209 bp Feature: domain Description: PRK07246 Location: 75747-78207 bp Feature: domain Description: PRK07246 Location: 75747-78207 bp Feature: gene Location: 78295-79488 bp Feature: domain Description: PRK05764 Location: 78301-79474 bp Feature: domain Description: PRK05764 Location: 783 01-79474 bp Feature: gene Location: 130405-130794 bp Feature: domain Description: PrgI Location: 130423-130690 bp Feature: domain Description: PrgI Location: 13 0423 -13 0690 bp Feature: gene Location: 130706-132253 bp Feature: domain Description: TraC-F-type Location: 131213-131384 bp Feature: domain Description: TraC-F-type Location: 13 1213 -13 13 84 bp Feature: domain Description: TraC-F-type Location: 131543-132221 bp Feature: domain Description: TraC-F-type Location: 13 1543 -13 2221 bp Feature: gene Location: 132787-134460 bp Feature: RT Description: RVT_N Location: 132859-133099 bp Feature: RT Description: RVT_N Location: 13 2859-13 3 099 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 133147-133807 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13 3 147-13 3 807 bp Feature: domain Description: GIIM Note: maturase Location: 133876-134095 bp Feature: domain Description: GIIM Note: maturase Location: 13 3 876-13 4095 bp Feature: gene Location: 134465-135448 bp Feature: domain Description: TraC-F-type Location: 134549-135278 bp Feature: domain Description: TraC-F-type Location: 13 4549-13 5278 bp Feature: gene Location: 135452-136978 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT McsA (COG3880), ClpA (TIGR02639), YkuJ (COG4703), RVT-GII, GIIM (pfam08388), HisM (COG0765), GlnQ (COG1126), PRK08643 ((S)-acetoin forming diacetyl reductase), COG3666 (Transposase ), DDE_Tnp_1_6 (pfam13751)
PRK07246 (bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated), PRK05764 (aspartate aminotransferase; Provisional), PrgI (pfam12666), TraC-F-type (TIGR02746), RVT_N (pfam13655)

Seq: AEXT01000007.1 Streptococcus agalactiae FSL S3-026 contig07, whole genome shotgun sequence (939981 bp)
Overview 1 RT 1: 47878-54655 bp 2 RT 2: 231118-238050 bp 3 RT 3: 405040-409551 bp 4 RT 4: 688978-699739 bp 5 RT 5: 707214-714921 bp Neighborhood of RT #1 [47878, 54657] PRK10416 COG3666 DDE_Tnp_1_6 RVT-GII GIIM YcgQ YraQ Neighborhood of RT #2 [231118, 238055] PRK11856 lipoamide_DH lipoyltrans RVT-GII GIIM COG3442 MurE Neighborhood of RT #3 [405040, 409556] PHA02517 InsE RVT-GII GIIM MdlB Neighborhood of RT #4 [688978, 699768] RVT-GII GIIM InsE HTH_21 PHA02517 RVT_N RVT-GII N6_Mtase COG4646 KOG0390 Neighborhood of RT #5 [707214, 714989] Peptidase_M23 Phage_lysozyme2 PRK08581 TraC-F-type RVT_N RVT-GII GIIM TraC-F-type PrgI Feature: gene Location: 47878-49488 bp Feature: domain Description: PRK10416 Location: 48217-49477 bp Feature: domain Description: PRK104 16 Location: 4 8217-4 94 77 bp Feature: gene Location: 49615-51111 bp Feature: domain Description: COG3666 Location: 49627-50104 bp Feature: domain Description: COG3666 Location: 4 9627-50104 bp Feature: domain Description: DDE_Tnp_1_6 Location: 50578-50932 bp Feature: domain Description: DDE_Tnp_1_6 Location: 50578-50932 bp Feature: gene Location: 51600-52877 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51804-52419 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51804 -524 19 bp Feature: domain Description: GIIM Note: maturase Location: 52473-52689 bp Feature: domain Description: GIIM Note: maturase Location: 524 73-52689 bp Feature: gene Location: 52943-53755 bp Feature: domain Description: YcgQ Location: 52946-53753 bp Feature: domain Description: YcgQ Location: 5294 6-53753 bp Feature: gene Location: 53755-54657 bp Feature: domain Description: YraQ Location: 53758-54655 bp Feature: domain Description: YraQ Location: 53758-54 655 bp Feature: gene Location: 231118-232875 bp Feature: domain Description: PRK11856 Location: 231121-231469 bp Feature: domain Description: PRK11856 Location: 231121-2314 69 bp Feature: domain Description: lipoamide_DH Location: 231496-232855 bp Feature: domain Description: lipoamide_DH Location: 2314 96-232855 bp Feature: gene Location: 232973-233962 bp Feature: domain Description: lipoyltrans Location: 232988-233936 bp Feature: domain Description: lipoyltrans Location: 232988-233936 bp Feature: gene Location: 234584-235861 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 234788-235403 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 234 788-2354 03 bp Feature: domain Description: GIIM Note: maturase Location: 235457-235673 bp Feature: domain Description: GIIM Note: maturase Location: 2354 57-235673 bp Feature: gene Location: 235927-236712 bp Feature: domain Description: COG3442 Location: 235975-236701 bp Feature: domain Description: COG34 4 2 Location: 235975-236701 bp Feature: gene Location: 236712-238055 bp Feature: domain Description: MurE Location: 236745-238050 bp Feature: domain Description: MurE Location: 23674 5-238050 bp Feature: gene Location: 405040-405789 bp Feature: domain Description: PHA02517 Location: 405052-405784 bp Feature: domain Description: PHA02517 Location: 4 05052-4 05784 bp Feature: gene Location: 405909-406184 bp Feature: domain Description: InsE Location: 405921-406170 bp Feature: domain Description: InsE Location: 4 05921-4 06170 bp Feature: gene Location: 406283-407521 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 406448-407063 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 064 4 8-4 07063 bp Feature: domain Description: GIIM Note: maturase Location: 407117-407333 bp Feature: domain Description: GIIM Note: maturase Location: 4 07117-4 07333 bp Feature: gene Location: 407612-407809 bp Feature: gene Location: 407823-409556 bp Feature: domain Description: MdlB Location: 407859-409551 bp Feature: domain Description: MdlB Location: 4 07859-4 09551 bp Feature: gene Location: 688978-689277 bp Feature: gene Location: 689348-690157 bp Feature: gene Location: 690291-691349 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 690354-690672 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 690354 -690672 bp Feature: domain Description: GIIM Note: maturase Location: 690729-690957 bp Feature: domain Description: GIIM Note: maturase Location: 690729-690957 bp Feature: gene Location: 691369-691644 bp Feature: domain Description: InsE Location: 691381-691630 bp Feature: domain Description: InsE Location: 691381-691630 bp Feature: gene Location: 691764-691940 bp Feature: domain Description: HTH_21 Location: 691776-691920 bp Feature: domain Description: HTH_21 Location: 691776-691920 bp Feature: gene Location: 692140-692514 bp Feature: domain Description: PHA02517 Location: 692143-692509 bp Feature: domain Description: PHA02517 Location: 69214 3-692509 bp Feature: gene Location: 692532-693212 bp Feature: RT Description: RVT_N Location: 692577-692820 bp Feature: RT Description: RVT_N Location: 692577-692820 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 692865-693201 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 692865-693201 bp Feature: gene Location: 693699-693821 bp Feature: gene Location: 693772-699768 bp Feature: domain Description: N6_Mtase Location: 695785-696376 bp Feature: domain Description: N6_Mtase Location: 695785-696376 bp Feature: domain Description: COG4646 Location: 696967-699271 bp Feature: domain Description: COG4 64 6 Location: 696967-699271 bp Feature: domain Description: KOG0390 Location: 699541-699739 bp Feature: domain Description: KOG0390 Location: 69954 1-699739 bp Feature: gene Location: 707214-710015 bp Feature: domain Description: Peptidase_M23 Location: 708657-708870 bp Feature: domain Description: Peptidase_M23 Location: 708657-708870 bp Feature: domain Description: Phage_lysozyme2 Location: 709011-709524 bp Feature: domain Description: Phage_lysozyme2 Location: 709011-709524 bp Feature: domain Description: PRK08581 Location: 709641-709977 bp Feature: domain Description: PRK08581 Location: 70964 1-709977 bp Feature: gene Location: 710017-710979 bp Feature: domain Description: TraC-F-type Location: 710110-710806 bp Feature: domain Description: TraC-F-type Location: 710110-710806 bp Feature: gene Location: 710984-712657 bp Feature: RT Description: RVT_N Location: 711056-711296 bp Feature: RT Description: RVT_N Location: 711056-711296 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 711344-712004 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 71134 4 -712004 bp Feature: domain Description: GIIM Note: maturase Location: 712073-712292 bp Feature: domain Description: GIIM Note: maturase Location: 712073-712292 bp Feature: gene Location: 713186-714679 bp Feature: domain Description: TraC-F-type Location: 713585-714368 bp Feature: domain Description: TraC-F-type Location: 713585-714 368 bp Feature: gene Location: 714636-714989 bp Feature: domain Description: PrgI Location: 714648-714921 bp Feature: domain Description: PrgI Location: 714 64 8-714 921 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10416 (signal recognition particle-docking protein FtsY; Provisional), COG3666 (Transposase ), DDE_Tnp_1_6 (pfam13751), RVT-GII, GIIM (pfam08388), YcgQ (COG3689), YraQ (COG0701), PRK11856 (branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed), lipoamide_DH (TIGR01350), lipoyltrans (TIGR00545)
COG3442 (Glutamine amidotransferase related to the GATase domain of CobQ ), MurE (COG0769), PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963), MdlB (COG1132), HTH_21 (pfam13276), RVT_N (pfam13655), N6_Mtase (pfam02384), COG4646 (Adenine-specific DNA methylase, N12 class ), KOG0390 (KOG0390, DNA repair protein, SNF2 family )
Peptidase_M23 (pfam01551), Phage_lysozyme2 (pfam18013), PRK08581 (amidase domain-containing protein), TraC-F-type (TIGR02746), PrgI (pfam12666)