myRT

myRT report for GCA_000221585.2_ASM22158v2

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Seq: AFUI01000005.1 Finegoldia magna SY403409CC001050417 ctg1124668239007, whole genome shotgun sequence (18999 bp)
Overview 1 RT 1: 822-11426 bp Neighborhood of RT #1 [822, 11506] tRNA_anti-codon RVT_N RVT-GII GIIM PHA03411 COG4646 HELICc Feature: gene Location: 822-1478 bp Feature: domain Description: tRNA_anti-codon Location: 1203-1302 bp Feature: domain Description: tRNA_anti-codon Location: 1 203-1 302 bp Feature: gene Location: 1522-2850 bp Feature: gene Location: 2984-4654 bp Feature: RT Description: RVT_N Location: 3029-3272 bp Feature: RT Description: RVT_N Location: 3029-3272 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3317-3965 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 331 7-3965 bp Feature: domain Description: GIIM Note: maturase Location: 4019-4250 bp Feature: domain Description: GIIM Note: maturase Location: 401 9-4250 bp Feature: gene Location: 4724-4861 bp Feature: gene Location: 5210-11506 bp Feature: domain Description: PHA03411 Location: 7727-8033 bp Feature: domain Description: PHA0341 1 Location: 7727-8033 bp Feature: domain Description: COG4646 Location: 8348-11012 bp Feature: domain Description: COG4646 Location: 8348-1 1 01 2 bp Feature: domain Description: HELICc Location: 11060-11426 bp Feature: domain Description: HELICc Location: 1 1 060-1 1 426 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), PHA03411 (putative methyltransferase; Provisional), COG4646 (Adenine-specific DNA methylase, N12 class ), HELICc (smart00490), tRNA_anti-codon (pfam01336)

Seq: AFUI01000028.1 Finegoldia magna SY403409CC001050417 ctg1124668239017, whole genome shotgun sequence (4666 bp)
Overview 1 RT 1: 2297-4553 bp Neighborhood of RT #1 [2297, 4666] SSB_OBF Maff2 RVT-GII Feature: gene Location: 2297-2620 bp Feature: domain Description: SSB_OBF Location: 2324-2555 bp Feature: domain Description: SSB_OBF Location: 2 32 4-2 555 bp Feature: gene Location: 2621-2752 bp Feature: domain Description: Maff2 Location: 2624-2750 bp Feature: domain Description: Maff2 Location: 2 62 4-2 750 bp Feature: gene Location: 3620-4666 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3818-4553 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3818-4553 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SSB_OBF (cd04496), Maff2 (pfam12750), RVT-GII

Seq: AFUI01000030.1 Finegoldia magna SY403409CC001050417 ctg1124668238990, whole genome shotgun sequence (144986 bp)
Overview 1 RT 1: 141088-144957 bp Neighborhood of RT #1 [141088, 144957] SSB_OBF Maff2 RVT-GII HNHc Feature: gene Location: 141088-141399 bp Feature: domain Description: SSB_OBF Location: 141112-141331 bp Feature: domain Description: SSB_OBF Location: 141112-1413 3 1 bp Feature: gene Location: 141401-141532 bp Feature: domain Description: Maff2 Location: 141404-141530 bp Feature: domain Description: Maff2 Location: 141404-14153 0 bp Feature: gene Location: 142255-143301 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 142576-143290 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 142576-143 290 bp Feature: gene Location: 143480-144112 bp Feature: domain Description: HNHc Note: nucleases Location: 143840-144002 bp Feature: domain Description: HNHc Note: nucleases Location: 143 840-144002 bp Feature: gene Location: 144373-144957 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SSB_OBF (cd04496), Maff2 (pfam12750), RVT-GII, HNHc (smart00507)

Seq: AFUI01000017.1 Finegoldia magna SY403409CC001050417 ctg1124668239005, whole genome shotgun sequence (69681 bp)
Overview 1 RT 1: 29975-41113 bp Neighborhood of RT #1 [29975, 41205] CW_binding_2 CW_binding_2 CW_binding_2 Flg_new Flg_new Flg_new Flg_new Flg_new Flg_new Flg_new RVT-GII GIIM SR_TndX_transposase Recombinase Feature: gene Location: 29975-31297 bp Feature: domain Description: CW_binding_2 Location: 30419-30677 bp Feature: domain Description: CW_binding_2 Location: 304 19-30677 bp Feature: domain Description: CW_binding_2 Location: 30719-30986 bp Feature: domain Description: CW_binding_2 Location: 30719-30986 bp Feature: domain Description: CW_binding_2 Location: 31016-31259 bp Feature: domain Description: CW_binding_2 Location: 31016-31259 bp Feature: gene Location: 31294-37767 bp Feature: domain Description: Flg_new Location: 32998-33103 bp Feature: domain Description: Flg_new Location: 32998-33103 bp Feature: domain Description: Flg_new Location: 33259-33421 bp Feature: domain Description: Flg_new Location: 33259-334 21 bp Feature: domain Description: Flg_new Location: 36250-36367 bp Feature: domain Description: Flg_new Location: 36250-36367 bp Feature: domain Description: Flg_new Location: 36397-36601 bp Feature: domain Description: Flg_new Location: 36397-36601 bp Feature: domain Description: Flg_new Location: 36676-36835 bp Feature: domain Description: Flg_new Location: 36676-36835 bp Feature: domain Description: Flg_new Location: 37225-37426 bp Feature: domain Description: Flg_new Location: 37225-374 26 bp Feature: domain Description: Flg_new Location: 37504-37678 bp Feature: domain Description: Flg_new Location: 37504 -37678 bp Feature: gene Location: 37921-39201 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 38128-38743 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 38128-3874 3 bp Feature: domain Description: GIIM Note: maturase Location: 38806-39037 bp Feature: domain Description: GIIM Note: maturase Location: 38806-39037 bp Feature: gene Location: 39713-39976 bp Feature: gene Location: 40177-41205 bp Feature: domain Description: SR_TndX_transposase Location: 40192-40630 bp Feature: domain Description: SR_TndX_transposase Location: 4 0192-4 0630 bp Feature: domain Description: Recombinase Location: 40729-41113 bp Feature: domain Description: Recombinase Location: 4 0729-4 1113 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CW_binding_2 (pfam04122), Flg_new (pfam09479), RVT-GII, GIIM (pfam08388), SR_TndX_transposase (cd03770), Recombinase (pfam07508)

Seq: AFUI01000036.1 Finegoldia magna SY403409CC001050417 ctg1124668239015, whole genome shotgun sequence (13439 bp)
Overview 1 RT 1: 7207-11584 bp Neighborhood of RT #1 [7207, 11652] RVT-GII HNHc Maff2 SSB_OBF Feature: gene Location: 7207-7497 bp Feature: gene Location: 7507-8370 bp Feature: gene Location: 8631-10490 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8949-9687 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8949-9687 bp Feature: domain Description: HNHc Note: nucleases Location: 10218-10380 bp Feature: domain Description: HNHc Note: nucleases Location: 10218-10380 bp Feature: gene Location: 11208-11339 bp Feature: domain Description: Maff2 Location: 11211-11337 bp Feature: domain Description: Maff2 Location: 11211-11337 bp Feature: gene Location: 11341-11652 bp Feature: domain Description: SSB_OBF Location: 11365-11584 bp Feature: domain Description: SSB_OBF Location: 11365 -115 84 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Maff2 (pfam12750), SSB_OBF (cd04496), RVT-GII, HNHc (smart00507)

Seq: AFUI01000037.1 Finegoldia magna SY403409CC001050417 ctg1124668239018, whole genome shotgun sequence (61114 bp)
Overview 1 RT 1: 1-2359 bp Neighborhood of RT #1 [1, 2359] RVT-GII HNHc Feature: gene Location: 1-969 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-166 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-16 6 bp Feature: domain Description: HNHc Note: nucleases Location: 697-859 bp Feature: domain Description: HNHc Note: nucleases Location: 6 97-859 bp Feature: gene Location: 1275-2084 bp Feature: gene Location: 2102-2359 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HNHc (smart00507)