myRT

myRT report for GCA_000222685.2_ASM22268v1

Download annotations/find similar RTs

Seq: AFWJ01000013.1 Vibrio nigripulchritudo ATCC 27043 VINI7043_11, whole genome shotgun sequence (82958 bp)
Overview 1 RT 1: 15840-19351 bp Neighborhood of RT #1 [15840, 19351] Bac_DnaA_C RVT-UG4 BtuF Feature: gene Location: 15840-15962 bp Feature: gene Location: 16130-16870 bp Ori: EGU61396.1 Feature: domain Description: Bac_DnaA_C Location: 16592-16856 bp Feature: domain Description: Bac_DnaA_C Location: 1 6592-1 6856 bp Feature: gene Location: 16964-17431 bp Ori: EGU61397.1 Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 17000-17165 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 1 7000-1 71 65 bp Feature: gene Location: 17786-18601 bp Ori: EGU61398.1 Feature: domain Description: BtuF Location: 17816-18560 bp Feature: domain Description: BtuF Location: 1 781 6-1 8560 bp Feature: gene Location: 18743-19351 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Bac_DnaA_C (smart00760), RVT-UG4, BtuF (cd01144)

Seq: AFWJ01000111.1 Vibrio nigripulchritudo ATCC 27043 VINI7043_199, whole genome shotgun sequence (6542 bp)
Overview 1 RT 1: 1-6345 bp Neighborhood of RT #1 [1, 6542] RVT-Retrons SpoIVFB FAT Peptidase_C39A FAT Feature: gene Location: 1-846 bp Feature: gene Location: 843-1262 bp Feature: gene Location: 1255-3105 bp Ori: EGU59857.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1858-2470 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1858-2 470 bp Feature: gene Location: 3163-4242 bp Ori: EGU59858.1 Feature: domain Description: SpoIVFB Location: 3490-4168 bp Feature: domain Description: SpoIVFB Location: 3490-4168 bp Feature: gene Location: 4464-6542 bp Ori: EGU59859.1 Feature: domain Description: FAT Location: 4965-5313 bp Feature: domain Description: FAT Location: 4965-5313 bp Feature: domain Description: Peptidase_C39A Location: 5409-5733 bp Feature: domain Description: Peptidase_C39A Location: 5409-5733 bp Feature: domain Description: FAT Location: 6060-6345 bp Feature: domain Description: FAT Location: 6060-6345 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, SpoIVFB (COG1994), FAT (pfam02259), Peptidase_C39A (cd02549)

Seq: AFWJ01000320.1 Vibrio nigripulchritudo ATCC 27043 VINI7043_88, whole genome shotgun sequence (21243 bp)
Overview 1 RT 1: 3141-11080 bp Neighborhood of RT #1 [3141, 11082] PRK01202 PRK05367 RVT-UG5 nitrilase DUF5062 Feature: gene Location: 3141-3521 bp Ori: EGU51212.1 Feature: domain Description: PRK01202 Location: 3150-3513 bp Feature: domain Description: PRK01202 Location: 3 150-3 513 bp Feature: gene Location: 3552-6416 bp Ori: EGU51213.1 Feature: domain Description: PRK05367 Location: 3576-6411 bp Feature: domain Description: PRK053 67 Location: 3 576-6411 bp Feature: gene Location: 6825-9764 bp Ori: EGU51214.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 7320-7812 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 73 20-7812 bp Feature: domain Description: nitrilase Location: 9102-9690 bp Feature: domain Description: nitrilase Location: 9102-9690 bp Feature: gene Location: 9797-10273 bp Feature: gene Location: 10891-11082 bp Ori: EGU51216.1 Feature: domain Description: DUF5062 Location: 10897-11080 bp Feature: domain Description: DUF5062 Location: 10897-11080 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK01202 (glycine cleavage system protein GcvH), PRK05367 (aminomethyl-transferring glycine dehydrogenase), RVT-UG5, nitrilase (cl11424), DUF5062 (pfam16691)

Seq: AFWJ01000280.1 Vibrio nigripulchritudo ATCC 27043 VINI7043_51, whole genome shotgun sequence (31702 bp)
Overview 1 RT 1: 15267-24532 bp Neighborhood of RT #1 [15267, 24532] RVT-AbiP2 Feature: gene Location: 15267-16421 bp Feature: gene Location: 16677-20999 bp Feature: gene Location: 21273-22811 bp Ori: EGU55812.1 Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 21702-22161 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 21702-22161 bp Feature: gene Location: 23163-23753 bp Feature: gene Location: 23753-24532 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-AbiP2