myRT

myRT report for GCA_000223985.2_ASM22398v1

Download annotations/find similar RTs

Seq: AFWV01000019.1 Thiocapsa marina 5811 ctg458, whole genome shotgun sequence (87264 bp)
Overview 1 RT 1: 74924-77825 bp Neighborhood of RT #1 [74924, 77825] RelE RVT-UG7 RelE Feature: gene Location: 74924-75127 bp Feature: gene Location: 75131-75379 bp Ori: EGV16336.1 Feature: domain Description: RelE Location: 75134-75374 bp Feature: domain Description: RelE Location: 751 34-75374 bp Feature: gene Location: 75611-77146 bp Ori: EGV16337.1 Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 76004-76415 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 76004-7641 5 bp Feature: gene Location: 77289-77516 bp Ori: EGV16338.1 Feature: domain Description: RelE Location: 77346-77481 bp Feature: domain Description: RelE Location: 77346-77481 bp Feature: gene Location: 77595-77825 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RelE (pfam06296), RVT-UG7

Seq: AFWV01000004.1 Thiocapsa marina 5811 ctg472, whole genome shotgun sequence (386487 bp)
Overview 1 RT 1: 232235-237935 bp Neighborhood of RT #1 [232235, 237985] PinE Zn_ribbon_recom HTH_17 HTH_17 RVT-GII GIIM GT_2_WfgS_like GT4_MtfB-like Feature: gene Location: 232235-234457 bp Ori: EGV19331.1 Feature: domain Description: PinE Location: 232283-232871 bp Feature: domain Description: PinE Location: 2 32 2 83-2 32 871 bp Feature: domain Description: Zn_ribbon_recom Location: 233228-233402 bp Feature: domain Description: Zn_ribbon_recom Location: 2 332 2 8-2 33402 bp Feature: domain Description: HTH_17 Location: 234110-234224 bp Feature: domain Description: HTH_17 Location: 2 34110-2 342 2 4 bp Feature: domain Description: HTH_17 Location: 234293-234410 bp Feature: domain Description: HTH_17 Location: 2 342 93-2 34410 bp Feature: gene Location: 234450-234623 bp Feature: gene Location: 234951-235775 bp Ori: EGV19333.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 234960-235350 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 34960-2 35350 bp Feature: domain Description: GIIM Note: maturase Location: 235398-235626 bp Feature: domain Description: GIIM Note: maturase Location: 2 35398-2 3562 6 bp Feature: gene Location: 236047-236796 bp Ori: EGV19334.1 Feature: domain Description: GT_2_WfgS_like Location: 236071-236668 bp Feature: domain Description: GT_2 _WfgS_like Location: 2 36071-2 36668 bp Feature: gene Location: 236825-237985 bp Ori: EGV19335.1 Feature: domain Description: GT4_MtfB-like Location: 236834-237935 bp Feature: domain Description: GT4_MtfB-like Location: 2 36834-2 37935 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PinE (COG1961), Zn_ribbon_recom (pfam13408), HTH_17 (pfam12728), RVT-GII, GIIM (pfam08388), GT_2_WfgS_like (cd06433), GT4_MtfB-like (cd03809)

Seq: AFWV01000020.1 Thiocapsa marina 5811 ctg455, whole genome shotgun sequence (87167 bp)
Overview 1 RT 1: 34984-42275 bp Neighborhood of RT #1 [34984, 42280] YfmG YfmG PG_binding_1 YfmG RVT-DGRs Avd_like YfmG PEGA YfmG Feature: gene Location: 34984-35793 bp Feature: gene Location: 36127-38721 bp Ori: EGV16236.1 Feature: domain Description: YfmG Location: 36157-36271 bp Feature: domain Description: YfmG Location: 3 6157-3 6271 bp Feature: domain Description: YfmG Location: 37024-37243 bp Feature: domain Description: YfmG Location: 3 7024-3 7243 bp Feature: domain Description: PG_binding_1 Location: 37834-37912 bp Feature: domain Description: PG_binding_1 Location: 3 783 4-3 7912 bp Feature: domain Description: YfmG Location: 37954-38716 bp Feature: domain Description: YfmG Location: 3 7954-3 8716 bp Feature: gene Location: 38718-39500 bp Ori: EGV16237.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 38772-39276 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3 8772-3 9276 bp Feature: gene Location: 39497-39865 bp Ori: EGV16238.1 Feature: domain Description: Avd_like Location: 39545-39845 bp Feature: domain Description: Avd_like Location: 3 9545-3 9845 bp Feature: gene Location: 40019-42280 bp Ori: EGV16239.1 Feature: domain Description: YfmG Location: 40319-40979 bp Feature: domain Description: YfmG Location: 403 19-40979 bp Feature: domain Description: PEGA Location: 41096-41270 bp Feature: domain Description: PEGA Location: 41096-41270 bp Feature: domain Description: YfmG Location: 41555-42275 bp Feature: domain Description: YfmG Location: 41555-42275 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YfmG (COG1262), PG_binding_1 (pfam01471), RVT-DGRs, Avd_like (cd16376), PEGA (pfam08308)

Seq: AFWV01000011.1 Thiocapsa marina 5811 ctg465, whole genome shotgun sequence (257345 bp)
Overview 1 RT 1: 254324-257066 bp Neighborhood of RT #1 [254324, 257167] OafA fliH RVT-GII GIIM Feature: gene Location: 254324-254689 bp Ori: EGV17465.1 Feature: domain Description: OafA Location: 254336-254687 bp Feature: domain Description: OafA Location: 254 336-254 687 bp Feature: gene Location: 254915-255991 bp Ori: EGV17466.1 Feature: domain Description: fliH Location: 255605-255794 bp Feature: domain Description: fliH Location: 255605-255794 bp Feature: gene Location: 256340-257167 bp Ori: EGV17467.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 256349-256778 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25634 9-256778 bp Feature: domain Description: GIIM Note: maturase Location: 256853-257066 bp Feature: domain Description: GIIM Note: maturase Location: 256853-257066 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT OafA (COG1835), fliH (PRK13386), RVT-GII, GIIM (pfam08388)

Seq: AFWV01000005.1 Thiocapsa marina 5811 ctg471, whole genome shotgun sequence (361075 bp)
Overview 1 RT 1: 47763-57137 bp Neighborhood of RT #1 [47763, 58447] COG4938 COG4938 RVT-UG12 recD_rel DEXDc_RapA PRK04914 Feature: gene Location: 47763-48884 bp Ori: EGV18830.1 Feature: domain Description: COG4938 Location: 47766-47907 bp Feature: domain Description: COG4938 Location: 47766-47907 bp Feature: domain Description: COG4938 Location: 48156-48879 bp Feature: domain Description: COG4938 Location: 4815 6-48879 bp Feature: gene Location: 48893-49888 bp Feature: gene Location: 50841-52526 bp Ori: EGV18832.1 Feature: RT Description: RVT-UG12 Note: UG12 RT Location: 51207-51657 bp Feature: RT Description: RVT-UG12 Note: UG12 RT Location: 5 1207-5 165 7 bp Feature: gene Location: 52840-55023 bp Ori: EGV18833.1 Feature: domain Description: recD_rel Location: 52882-55012 bp Feature: domain Description: recD_rel Location: 5 2882-5 5 012 bp Feature: gene Location: 55244-58447 bp Ori: EGV18834.1 Feature: domain Description: DEXDc_RapA Location: 55619-56270 bp Feature: domain Description: DEXDc_RapA Location: 5 5 619-5 6270 bp Feature: domain Description: PRK04914 Location: 56753-57137 bp Feature: domain Description: PRK04914 Location: 5 675 3-5 7137 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4938 (Predicted ATPase ), RVT-UG12, recD_rel (TIGR01448), DEXDc_RapA (cd18011), PRK04914 (RNA polymerase-associated protein RapA)

Seq: AFWV01000025.1 Thiocapsa marina 5811 ctg451, whole genome shotgun sequence (27862 bp)
Overview 1 RT 1: 23732-27735 bp Neighborhood of RT #1 [23732, 27862] PRK04196 ATP-synt_D RVT-GII Feature: gene Location: 23732-25147 bp Ori: EGV16041.1 Feature: domain Description: PRK04196 Location: 23771-25112 bp Feature: domain Description: PRK04196 Location: 23771-25112 bp Feature: gene Location: 25144-25752 bp Ori: EGV16042.1 Feature: domain Description: ATP-synt_D Location: 25186-25744 bp Feature: domain Description: ATP-synt_D Location: 25186 -25744 bp Feature: gene Location: 27192-27862 bp Ori: EGV16043.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27483-27735 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27483-27735 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK04196 (V-type ATP synthase subunit B; Provisional), ATP-synt_D (pfam01813), RVT-GII

Seq: AFWV01000010.1 Thiocapsa marina 5811 ctg466, whole genome shotgun sequence (263112 bp)
Overview 1 RT 1: 190514-195812 bp Neighborhood of RT #1 [190514, 196183] PRK10153 TolBN TPR TPR TPR RVT-GII PGPGW Sulfotransfer_3 Feature: gene Location: 190514-191371 bp Feature: gene Location: 191490-193199 bp Ori: EGV17646.1 Feature: domain Description: PRK10153 Location: 191541-191838 bp Feature: domain Description: PRK10153 Location: 191541-191838 bp Feature: domain Description: TolBN Location: 192015-192399 bp Feature: domain Description: TolBN Location: 192015-192399 bp Feature: domain Description: TPR Location: 192501-192600 bp Feature: domain Description: TPR Location: 192501-192600 bp Feature: domain Description: TPR Location: 192642-192876 bp Feature: domain Description: TPR Location: 192642-19287 6 bp Feature: domain Description: TPR Location: 192921-193128 bp Feature: domain Description: TPR Location: 192921-193128 bp Feature: gene Location: 193387-194124 bp Ori: EGV17647.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 193678-193870 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19367 8-19387 0 bp Feature: domain Description: PGPGW Location: 193906-193999 bp Feature: domain Description: PGPGW Location: 193906-193999 bp Feature: gene Location: 194242-194925 bp Feature: gene Location: 195245-196183 bp Ori: EGV17649.1 Feature: domain Description: Sulfotransfer_3 Location: 195275-195812 bp Feature: domain Description: Sulfotransfer_3 Location: 19527 5-195812 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10153 (DNA-binding transcriptional activator CadC; Provisional), TolBN (COG5616), TPR (smart00028), RVT-GII, PGPGW (pfam09656), Sulfotransfer_3 (pfam13469)