myRT

myRT report for GCA_000224065.2_ASM22406v1

Download annotations/find similar RTs

Seq: AFWT01000002.1 Thiorhodococcus drewsii AZ1 ctg209, whole genome shotgun sequence (257199 bp)
Overview 1 RT 1: 81959-91601 bp 2 RT 2: 227774-233903 bp Neighborhood of RT #1 [81959, 91603] WGR_DNA_ligase SWIM RVT-Retrons WGR PQQ PQQ AraC_binding_2 AraC Neighborhood of RT #2 [227774, 234010] PRK04192 Acyl_transf_3 RVT-GII GIIM InsE PHA02517 Feature: gene Location: 81959-85027 bp Ori: EGV33644.1 Feature: domain Description: WGR_DNA_ligase Location: 81974-82199 bp Feature: domain Description: WGR_DNA_ligase Location: 81 974-821 99 bp Feature: gene Location: 85017-86675 bp Ori: EGV33645.1 Feature: domain Description: SWIM Location: 86556-86628 bp Feature: domain Description: SWIM Location: 86556-86628 bp Feature: gene Location: 87046-88722 bp Ori: EGV33646.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 87718-88333 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 8771 8-88333 bp Feature: gene Location: 89001-90425 bp Ori: EGV33647.1 Feature: domain Description: WGR Location: 89022-89256 bp Feature: domain Description: WGR Location: 89022-89256 bp Feature: domain Description: PQQ Location: 89304-89907 bp Feature: domain Description: PQQ Location: 89304-89907 bp Feature: domain Description: PQQ Location: 89919-90105 bp Feature: domain Description: PQQ Location: 8991 9-901 05 bp Feature: gene Location: 90638-91603 bp Ori: EGV33648.1 Feature: domain Description: AraC_binding_2 Location: 90758-91241 bp Feature: domain Description: AraC_binding_2 Location: 90758-91 241 bp Feature: domain Description: AraC Location: 91283-91601 bp Feature: domain Description: AraC Location: 91 283-91 601 bp Feature: gene Location: 227774-229579 bp Ori: EGV33767.1 Feature: domain Description: PRK04192 Location: 227795-229532 bp Feature: domain Description: PRK041 92 Location: 227795-229532 bp Feature: gene Location: 229618-230634 bp Ori: EGV33768.1 Feature: domain Description: Acyl_transf_3 Location: 229654-230563 bp Feature: domain Description: Acyl_transf_3 Location: 229654-230563 bp Feature: gene Location: 230826-232160 bp Ori: EGV33769.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 231105-231723 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 231 1 05-231 723 bp Feature: domain Description: GIIM Note: maturase Location: 231765-231975 bp Feature: domain Description: GIIM Note: maturase Location: 231 765-231 975 bp Feature: gene Location: 232800-233093 bp Ori: EGV33770.1 Feature: domain Description: InsE Location: 232809-233076 bp Feature: domain Description: InsE Location: 232809-233076 bp Feature: gene Location: 233090-234010 bp Ori: EGV33771.1 Feature: domain Description: PHA02517 Location: 233258-233903 bp Feature: domain Description: PHA0251 7 Location: 233258-233903 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT WGR_DNA_ligase (cd07998), SWIM (pfam04434), RVT-Retrons, WGR (smart00773), PQQ (smart00564), AraC_binding_2 (pfam14525), AraC (COG2207), PRK04192 (V-type ATP synthase subunit A; Provisional), Acyl_transf_3 (pfam01757), RVT-GII
GIIM (pfam08388), InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed)

Seq: AFWT01000022.1 Thiorhodococcus drewsii AZ1 ctg190, whole genome shotgun sequence (86380 bp)
Overview 1 RT 1: 14801-20679 bp Neighborhood of RT #1 [14801, 20735] WGR_MMR_like RVT-UG3 RVT-UG8 cobS ribazole_cobC Feature: gene Location: 14801-15040 bp Ori: EGV29886.1 Feature: domain Description: WGR_MMR_like Location: 14819-15011 bp Feature: domain Description: WGR_MMR_like Location: 14819-15011 bp Feature: gene Location: 15411-15644 bp Feature: gene Location: 16137-17375 bp Ori: EGV29888.1 Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 16422-16899 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 1642 2 -16899 bp Feature: gene Location: 17368-19314 bp Ori: EGV29889.1 Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 17887-18331 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 17887-18331 bp Feature: gene Location: 19825-20577 bp Ori: EGV29890.1 Feature: domain Description: cobS Location: 19834-20560 bp Feature: domain Description: cobS Location: 19834-2 0560 bp Feature: gene Location: 20574-20735 bp Ori: EGV29891.1 Feature: domain Description: ribazole_cobC Location: 20577-20679 bp Feature: domain Description: ribazole_cobC Location: 2 0577-2 0679 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT WGR_MMR_like (cd07996), RVT-UG3, RVT-UG8, cobS (TIGR00317), ribazole_cobC (TIGR03162)

Seq: AFWT01000027.1 Thiorhodococcus drewsii AZ1 ctg185, whole genome shotgun sequence (70056 bp)
Overview 1 RT 1: 62326-67093 bp Neighborhood of RT #1 [62326, 69765] PRK07773 SHOCT RVT-UG1 Feature: gene Location: 62326-64992 bp Ori: EGV29164.1 Feature: domain Description: PRK07773 Location: 62365-64963 bp Feature: domain Description: PRK07773 Location: 623 65-64963 bp Feature: gene Location: 65061-65531 bp Ori: EGV29165.1 Feature: domain Description: SHOCT Location: 65442-65520 bp Feature: domain Description: SHOCT Location: 65442-65520 bp Feature: gene Location: 65902-69765 bp Ori: EGV29166.1 Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 66541-67093 bp Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 66541-67093 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK07773 (replicative DNA helicase; Validated), SHOCT (pfam09851), RVT-UG1

Seq: AFWT01000006.1 Thiorhodococcus drewsii AZ1 ctg204, whole genome shotgun sequence (187824 bp)
Overview 1 RT 1: 145110-151027 bp Neighborhood of RT #1 [145110, 151038] CRISPR_Cas2 CRISPR_Cas2 RVT-CRISPR PRK14876 PRK14876 TraU Feature: gene Location: 145110-145253 bp Feature: gene Location: 145250-145858 bp Ori: EGV32679.1 Feature: domain Description: CRISPR_Cas2 Location: 145289-145436 bp Feature: domain Description: CRISPR_Cas2 Location: 14 5289-14 54 36 bp Feature: domain Description: CRISPR_Cas2 Location: 145592-145784 bp Feature: domain Description: CRISPR_Cas2 Location: 14 5592-14 5784 bp Feature: gene Location: 145855-146721 bp Ori: EGV32680.1 Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 146062-146653 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 14 6062-14 6653 bp Feature: gene Location: 147627-149972 bp Ori: EGV32681.1 Feature: domain Description: PRK14876 Location: 147825-148164 bp Feature: domain Description: PRK14 876 Location: 14 7825-14 8164 bp Feature: domain Description: PRK14876 Location: 148314-149865 bp Feature: domain Description: PRK14 876 Location: 14 8314 -14 9865 bp Feature: gene Location: 149980-151038 bp Ori: EGV32682.1 Feature: domain Description: TraU Location: 150133-151027 bp Feature: domain Description: TraU Location: 150133-151027 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CRISPR_Cas2 (pfam09827), RVT-CRISPR, PRK14876 (conjugal transfer mating pair stabilization protein TraN; Provisional), TraU (pfam06834)

Seq: AFWT01000005.1 Thiorhodococcus drewsii AZ1 ctg206, whole genome shotgun sequence (200379 bp)
Overview 1 RT 1: 269-7586 bp Neighborhood of RT #1 [269, 7586] RVT-GII GIIM RVT-UG16 VWA_CoxE Feature: gene Location: 269-1603 bp Ori: EGV32758.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 560-1214 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5 60-1214 bp Feature: domain Description: GIIM Note: maturase Location: 1289-1502 bp Feature: domain Description: GIIM Note: maturase Location: 1289-15 02 bp Feature: gene Location: 2219-3706 bp Ori: EGV32759.1 Feature: RT Description: RVT-UG16 Note: UG16 RT Location: 2582-2990 bp Feature: RT Description: RVT-UG16 Note: UG16 RT Location: 25 82-2990 bp Feature: gene Location: 4150-5298 bp Ori: EGV32760.1 Feature: domain Description: VWA_CoxE Location: 4573-5221 bp Feature: domain Description: VWA_CoxE Location: 45 73-5 221 bp Feature: gene Location: 5295-7586 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), RVT-UG16, VWA_CoxE (pfam05762)

Seq: AFWT01000016.1 Thiorhodococcus drewsii AZ1 ctg196, whole genome shotgun sequence (133844 bp)
Overview 1 RT 1: 92969-100565 bp 2 RT 2: 127606-132797 bp Neighborhood of RT #1 [92969, 100565] TrkG TrkA RVT-Retrons mcbC-like_oxidoreductase mcbC-like_oxidoreductase Neighborhood of RT #2 [127606, 132994] YfmG YfmG RVT-DGRs HRDC YfmG Feature: gene Location: 92969-94429 bp Ori: EGV30849.1 Feature: domain Description: TrkG Location: 93029-94409 bp Feature: domain Description: TrkG Location: 93029-94409 bp Feature: gene Location: 94426-95088 bp Ori: EGV30850.1 Feature: domain Description: TrkA Location: 94429-95056 bp Feature: domain Description: TrkA Location: 94429-95056 bp Feature: gene Location: 95472-97205 bp Ori: EGV30851.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 95607-96249 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 956 07-96 249 bp Feature: gene Location: 98143-99753 bp Ori: EGV30852.1 Feature: domain Description: mcbC-like_oxidoreductase Location: 98386-98812 bp Feature: domain Description: mcbC-like_oxidoreductase Location: 98386 -98812 bp Feature: domain Description: mcbC-like_oxidoreductase Location: 99364-99685 bp Feature: domain Description: mcbC-like_oxidoreductase Location: 9936 4-996 85 bp Feature: gene Location: 99774-100565 bp Feature: gene Location: 127606-128370 bp Ori: EGV30881.1 Feature: domain Description: YfmG Location: 127720-128362 bp Feature: domain Description: YfmG Location: 127720-12836 2 bp Feature: gene Location: 128354-128749 bp Ori: EGV30882.1 Feature: domain Description: YfmG Location: 128414-128546 bp Feature: domain Description: YfmG Location: 128414-128546 bp Feature: gene Location: 128742-129746 bp Ori: EGV30883.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 128955-129537 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 128955-129537 bp Feature: gene Location: 129739-130203 bp Ori: EGV30884.1 Feature: domain Description: HRDC Location: 129988-130183 bp Feature: domain Description: HRDC Location: 129988-130183 bp Feature: gene Location: 130253-132994 bp Ori: EGV30885.1 Feature: domain Description: YfmG Location: 132131-132797 bp Feature: domain Description: YfmG Location: 132131-132797 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TrkG (COG0168), TrkA (COG0569), RVT-Retrons, mcbC-like_oxidoreductase, YfmG (COG1262), RVT-DGRs, HRDC (smart00341)

Seq: AFWT01000042.1 Thiorhodococcus drewsii AZ1 ctg157, whole genome shotgun sequence (43409 bp)
Overview 1 RT 1: 22593-32593 bp Neighborhood of RT #1 [22593, 33759] NHL SHOCT IclR RVT-GII DDE_Tnp_1 DUF4214 DUF4214 ZU5 PKD DUF1566 Feature: gene Location: 22593-23405 bp Ori: EGV28244.1 Feature: domain Description: NHL Location: 22968-23181 bp Feature: domain Description: NHL Location: 22968-23181 bp Feature: domain Description: SHOCT Location: 23316-23394 bp Feature: domain Description: SHOCT Location: 23316-23394 bp Feature: gene Location: 23443-24222 bp Ori: EGV28245.1 Feature: domain Description: IclR Location: 23473-24193 bp Feature: domain Description: IclR Location: 2347 3-24193 bp Feature: gene Location: 24940-26265 bp Ori: EGV28246.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25198-25885 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25198-25885 bp Feature: gene Location: 26577-27788 bp Ori: EGV28247.1 Feature: domain Description: DDE_Tnp_1 Location: 26895-27450 bp Feature: domain Description: DDE_Tnp_1 Location: 26895-27 450 bp Feature: gene Location: 28063-33759 bp Ori: EGV28248.1 Feature: domain Description: DUF4214 Location: 28207-28279 bp Feature: domain Description: DUF4214 Location: 28207 -2827 9 bp Feature: domain Description: DUF4214 Location: 28309-28495 bp Feature: domain Description: DUF4214 Location: 28309-28495 bp Feature: domain Description: ZU5 Location: 29665-29836 bp Feature: domain Description: ZU5 Location: 29665-29836 bp Feature: domain Description: PKD Location: 32017-32233 bp Feature: domain Description: PKD Location: 32017 -32233 bp Feature: domain Description: DUF1566 Location: 32302-32593 bp Feature: domain Description: DUF1566 Location: 32302-32593 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NHL (pfam01436), SHOCT (pfam09851), IclR (pfam01614), RVT-GII, DDE_Tnp_1 (pfam01609), DUF4214 (pfam13946), ZU5 (smart00218), PKD (smart00089), DUF1566 (pfam07603)