myRT

myRT report for GCA_000224785.2_ASM22478v2

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Seq: AGAV01000011.1 Lentibacillus jeotgali strain Grbi contig011, whole genome shotgun sequence (44967 bp)
Overview 1 RT 1: 29456-37684 bp Neighborhood of RT #1 [29456, 37684] PRK06526 HTH_23 COG4584 RVT-GII RVT-GII group_II_RT_mat Csn1 RVT-GII Feature: gene Location: 29456-30235 bp Feature: domain Description: PRK06526 Location: 29504-30203 bp Feature: domain Description: PRK06526 Location: 29504-30203 bp Feature: gene Location: 30232-31815 bp Feature: domain Description: HTH_23 Location: 30250-30364 bp Feature: domain Description: HTH_23 Location: 30250-30364 bp Feature: domain Description: COG4584 Location: 30595-31105 bp Feature: domain Description: COG4584 Location: 30595-31 1 05 bp Feature: gene Location: 31940-32869 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32264-32663 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32264-32663 bp Feature: gene Location: 33228-33452 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33231-33405 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33231 -33405 bp Feature: gene Location: 33464-34339 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 33485-33668 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 33485-33668 bp Feature: domain Description: Csn1 Location: 33863-34145 bp Feature: domain Description: Csn1 Location: 33863-341 45 bp Feature: gene Location: 35254-35451 bp Feature: gene Location: 35486-36907 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35843-36530 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35843-36530 bp Feature: gene Location: 37167-37355 bp Feature: gene Location: 37490-37684 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK06526 (transposase; Provisional), HTH_23 (pfam13384), COG4584 (Transposase ), RVT-GII, group_II_RT_mat (TIGR04416), Csn1 (cd09643)

Seq: AGAV01000005.1 Lentibacillus jeotgali strain Grbi contig005, whole genome shotgun sequence (673304 bp)
Overview 1 RT 1: 630434-636785 bp Neighborhood of RT #1 [630434, 636793] group_II_RT_mat RVT-GII xerS INT_RitA_C_like INT_RitB_C_like Phage_int_SAM_1 INT_RitC_C_like RVT-GII GIIM InsG CitE Feature: gene Location: 630434-630577 bp Feature: gene Location: 630611-630874 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 630725-630872 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 63072 5-630872 bp Feature: gene Location: 630914-631321 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 630917-631247 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 630917-6312 47 bp Feature: gene Location: 631412-632569 bp Feature: domain Description: xerS Location: 631694-631826 bp Feature: domain Description: xerS Location: 631694-63182 6 bp Feature: domain Description: INT_RitA_C_like Location: 632003-632540 bp Feature: domain Description: INT_RitA_C_like Location: 632 003-632 540 bp Feature: gene Location: 632562-633548 bp Feature: domain Description: INT_RitB_C_like Location: 632898-633486 bp Feature: domain Description: INT_RitB_C_like Location: 632 898-633486 bp Feature: gene Location: 633670-634548 bp Feature: domain Description: Phage_int_SAM_1 Location: 633700-633832 bp Feature: domain Description: Phage_int_SAM_1 Location: 633700-633832 bp Feature: domain Description: INT_RitC_C_like Location: 633913-634465 bp Feature: domain Description: INT_RitC_C_like Location: 633913-634465 bp Feature: gene Location: 634770-635315 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 634800-634932 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 634800-634932 bp Feature: domain Description: GIIM Note: maturase Location: 635010-635229 bp Feature: domain Description: GIIM Note: maturase Location: 635010-6352 2 9 bp Feature: gene Location: 635376-635693 bp Feature: domain Description: InsG Location: 635466-635610 bp Feature: domain Description: InsG Location: 635466-635610 bp Feature: gene Location: 635972-636793 bp Feature: domain Description: CitE Location: 635984-636785 bp Feature: domain Description: CitE Location: 635984-636785 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT group_II_RT_mat (TIGR04416), RVT-GII, xerS (PRK05084), INT_RitA_C_like (cd01188), INT_RitB_C_like (cd00797), Phage_int_SAM_1 (pfam02899), INT_RitC_C_like (cd01182), GIIM (pfam08388), InsG (COG3385), CitE (COG2301)

Seq: AGAV01000003.1 Lentibacillus jeotgali strain Grbi contig003, whole genome shotgun sequence (404176 bp)
Overview 1 RT 1: 652-5374 bp 2 RT 2: 8311-14031 bp 3 RT 3: 41285-45280 bp 4 RT 4: 86972-91600 bp 5 RT 5: 124345-127326 bp Neighborhood of RT #1 [652, 5374] Arr-ms RVT-GII HNHc Neighborhood of RT #2 [8311, 14031] HTH_23 COG4584 PRK06526 RVT-GII HNHc Neighborhood of RT #3 [41285, 45285] RVT-GII Csn1 Eis Neighborhood of RT #4 [86972, 91600] RVT-GII GIIM DLH Neighborhood of RT #5 [124345, 127326] RVT-GII GIIM TrHb1_N Feature: gene Location: 652-1659 bp Feature: gene Location: 1806-2222 bp Feature: domain Description: Arr-ms Location: 1845-2136 bp Feature: domain Description: Arr-ms Location: 1845-213 6 bp Feature: gene Location: 3092-4936 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3467-4163 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 467-4163 bp Feature: domain Description: HNHc Note: nucleases Location: 4718-4856 bp Feature: domain Description: HNHc Note: nucleases Location: 4718-4856 bp Feature: gene Location: 5004-5156 bp Feature: gene Location: 5207-5374 bp Feature: gene Location: 8311-9894 bp Feature: domain Description: HTH_23 Location: 8329-8443 bp Feature: domain Description: HTH_23 Location: 83 29-8443 bp Feature: domain Description: COG4584 Location: 8674-9184 bp Feature: domain Description: COG4584 Location: 8674-9184 bp Feature: gene Location: 9891-10670 bp Feature: domain Description: PRK06526 Location: 9939-10638 bp Feature: domain Description: PRK06526 Location: 993 9-1063 8 bp Feature: gene Location: 11157-12935 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11415-12111 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11415-12111 bp Feature: domain Description: HNHc Note: nucleases Location: 12684-12819 bp Feature: domain Description: HNHc Note: nucleases Location: 12684-12819 bp Feature: gene Location: 13134-13637 bp Feature: gene Location: 13753-14031 bp Feature: gene Location: 41285-41437 bp Feature: gene Location: 41714-41848 bp Feature: gene Location: 41855-43732 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42167-42902 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42167-42902 bp Feature: domain Description: Csn1 Location: 43337-43595 bp Feature: domain Description: Csn1 Location: 43 3 3 7-43 595 bp Feature: gene Location: 43918-44055 bp Feature: gene Location: 44113-45285 bp Feature: domain Description: Eis Location: 44146-45280 bp Feature: domain Description: Eis Location: 44146-45280 bp Feature: gene Location: 86972-87145 bp Feature: gene Location: 87409-87552 bp Feature: gene Location: 87586-88893 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 87871-88510 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 87871-88510 bp Feature: domain Description: GIIM Note: maturase Location: 88588-88804 bp Feature: domain Description: GIIM Note: maturase Location: 88588-88804 bp Feature: gene Location: 89318-91150 bp Feature: domain Description: DLH Location: 89465-89777 bp Feature: domain Description: DLH Location: 89465-89777 bp Feature: gene Location: 91403-91600 bp Feature: gene Location: 124345-124473 bp Feature: gene Location: 125180-125323 bp Feature: gene Location: 125357-126664 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 125642-126281 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 125642-126281 bp Feature: domain Description: GIIM Note: maturase Location: 126359-126575 bp Feature: domain Description: GIIM Note: maturase Location: 1263 59-126575 bp Feature: gene Location: 126674-127072 bp Feature: domain Description: TrHb1_N Location: 126776-126941 bp Feature: domain Description: TrHb1_N Location: 126776-126941 bp Feature: gene Location: 127171-127326 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Arr-ms (pfam12120), RVT-GII, HNHc (smart00507), HTH_23 (pfam13384), COG4584 (Transposase ), PRK06526 (transposase; Provisional), Csn1 (cd09643), Eis (COG4552), GIIM (pfam08388), DLH (pfam01738)
TrHb1_N (cd00454)