myRT

myRT report for GCA_000225245.2_ASM22524v2

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Seq: AFEB01000045.1 Escherichia coli TX1999 gecTX1999.contig.44, whole genome shotgun sequence (247961 bp)
Overview 1 RT 1: 100791-104762 bp Neighborhood of RT #1 [100791, 104833] PRK10724 SmpB RVT-UG11 InsG Feature: gene Location: 100791-101228 bp Ori: EGX22552.1 Feature: domain Description: PRK10724 Location: 100794-101226 bp Feature: domain Description: PRK1 0724 Location: 1 00794-1 01 226 bp Feature: gene Location: 101399-101881 bp Ori: EGX22553.1 Gene: smpB Feature: domain Description: SmpB Location: 101429-101876 bp Feature: domain Description: SmpB Location: 1 01 429-1 01 876 bp Feature: gene Location: 102567-103340 bp Ori: EGX22554.1 Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 102702-103155 bp Feature: RT Description: RVT-UG1 1 Note: UG1 1 RT Location: 1 02702-1 031 55 bp Feature: gene Location: 103309-103482 bp Feature: gene Location: 103721-104833 bp Ori: EGX22556.1 Feature: domain Description: InsG Location: 103724-104762 bp Feature: domain Description: InsG Location: 1 03724-1 04762 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10724 (type II toxin-antitoxin system RatA family toxin), SmpB (pfam01668), RVT-UG11, InsG (COG3385)

Seq: AFEB01000064.1 Escherichia coli TX1999 gecTX1999.contig.63, whole genome shotgun sequence (22733 bp)
Overview 1 RT 1: 17185-21304 bp Neighborhood of RT #1 [17185, 21304] DUF1281 RVT_N RVT-GII GIIM HNHc PRK13699 Feature: gene Location: 17185-17544 bp Ori: EGX18749.1 Feature: domain Description: DUF1281 Location: 17194-17509 bp Feature: domain Description: DUF12 81 Location: 17194-17509 bp Feature: gene Location: 17763-17888 bp Feature: gene Location: 18149-19849 bp Ori: EGX18751.1 Feature: domain Description: RVT_N Location: 18203-18446 bp Feature: domain Description: RVT_N Location: 182 03-18446 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18491-19127 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18491-1912 7 bp Feature: domain Description: GIIM Note: maturase Location: 19178-19412 bp Feature: domain Description: GIIM Note: maturase Location: 19178-19412 bp Feature: domain Description: HNHc Note: nucleases Location: 19643-19793 bp Feature: domain Description: HNHc Note: nucleases Location: 19643-19793 bp Feature: gene Location: 20429-21082 bp Ori: EGX18752.1 Feature: domain Description: PRK13699 Location: 20474-21080 bp Feature: domain Description: PRK13699 Location: 2 0474-2 1080 bp Feature: gene Location: 21083-21304 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1281 (pfam06924), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), PRK13699 (putative methylase; Provisional)

Seq: AFEB01000059.1 Escherichia coli TX1999 gecTX1999.contig.58, whole genome shotgun sequence (49525 bp)
Overview 1 RT 1: 21421-24500 bp 2 RT 2: 34488-40176 bp Neighborhood of RT #1 [21421, 24652] InsE RVT_N RVT-GII TnpB_IS66 HTH_23 InsE Neighborhood of RT #2 [34488, 40176] YkfC InsG RVT-GII Zn_Tnp_IS91 Y2_Tnp RVT-GII GIIM PHA02517 Feature: gene Location: 21421-21840 bp Ori: EGX19653.1 Feature: domain Description: InsE Location: 21436-21820 bp Feature: domain Description: InsE Location: 2143 6-21820 bp Feature: gene Location: 21986-22111 bp Feature: gene Location: 22173-23096 bp Ori: EGX19655.1 Feature: domain Description: RVT_N Location: 22221-22464 bp Feature: domain Description: RVT_N Location: 22221-22464 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22509-23079 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22509-23 079 bp Feature: gene Location: 23694-24005 bp Ori: EGX19656.1 Feature: domain Description: TnpB_IS66 Location: 23721-24000 bp Feature: domain Description: TnpB_IS66 Location: 23 721-24000 bp Feature: gene Location: 24005-24652 bp Ori: EGX19657.1 Feature: domain Description: HTH_23 Location: 24056-24155 bp Feature: domain Description: HTH_23 Location: 24056-24155 bp Feature: domain Description: InsE Location: 24284-24500 bp Feature: domain Description: InsE Location: 24284-24500 bp Feature: gene Location: 34488-34634 bp Ori: EGX19671.1 Feature: domain Description: YkfC Location: 34491-34629 bp Feature: domain Description: YkfC Location: 3 4491-3 4629 bp Feature: gene Location: 34678-35790 bp Ori: EGX19672.1 Feature: domain Description: InsG Location: 34681-35719 bp Feature: domain Description: InsG Location: 3 4681-3 5719 bp Feature: gene Location: 36000-36428 bp Ori: EGX19673.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36096-36423 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 6096-3 6423 bp Feature: gene Location: 36579-36875 bp Feature: gene Location: 36875-38062 bp Ori: EGX19675.1 Feature: domain Description: Zn_Tnp_IS91 Location: 36917-37187 bp Feature: domain Description: Zn_Tnp_IS91 Location: 3 6917-3 7187 bp Feature: domain Description: Y2_Tnp Location: 37301-37841 bp Feature: domain Description: Y2_Tnp Location: 3 73 01-3 7841 bp Feature: gene Location: 38341-39174 bp Ori: EGX19676.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 38347-38656 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 83 47-3 8656 bp Feature: domain Description: GIIM Note: maturase Location: 38731-38950 bp Feature: domain Description: GIIM Note: maturase Location: 3 873 1-3 8950 bp Feature: gene Location: 39351-39737 bp Ori: EGX19677.1 Feature: domain Description: PHA02517 Location: 39354-39735 bp Feature: domain Description: PHA02517 Location: 3 93 54-3 973 5 bp Feature: gene Location: 39868-40176 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), RVT_N (pfam13655), RVT-GII, TnpB_IS66 (pfam05717), HTH_23 (pfam13384), YkfC (COG3344), InsG (COG3385), Zn_Tnp_IS91 (pfam14319), Y2_Tnp (pfam04986), GIIM (pfam08388)
PHA02517 (putative transposase OrfB; Reviewed)

Seq: AFEB01000058.1 Escherichia coli TX1999 gecTX1999.contig.57, whole genome shotgun sequence (178087 bp)
Overview 1 RT 1: 51956-55835 bp Neighborhood of RT #1 [51956, 55840] dut slmA RVT-Retrons pyrE rph Feature: gene Location: 51956-52411 bp Ori: EGX20322.1 Gene: dut Feature: domain Description: dut Location: 51959-52406 bp Feature: domain Description: dut Location: 51959-524 06 bp Feature: gene Location: 52518-53114 bp Ori: EGX20323.1 Feature: domain Description: slmA Location: 52524-53100 bp Feature: domain Description: slmA Location: 52524 -53100 bp Feature: gene Location: 53160-54119 bp Ori: EGX20324.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 53295-53844 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 53295-5384 4 bp Feature: gene Location: 54417-55058 bp Ori: EGX20325.1 Gene: pyrE Feature: domain Description: pyrE Location: 54420-55053 bp Feature: domain Description: pyrE Location: 54 4 20-55053 bp Feature: gene Location: 55124-55840 bp Ori: EGX20326.1 Gene: rph Feature: domain Description: rph Location: 55127-55835 bp Feature: domain Description: rph Location: 55127-55835 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dut (TIGR00576), slmA (PRK09480), RVT-Retrons, pyrE (TIGR00336), rph (PRK00173)