myRT

myRT report for GCA_000225745.1_Dorea_form_4_6_53AFAA_V1

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Seq: JH126515.1 Dorea formicigenerans 4_6_53AFAA genomic scaffold supercont1.29, whole genome shotgun sequence (27605 bp)
Overview 1 RT 1: 11236-15551 bp Neighborhood of RT #1 [11236, 15551] DDE_Tnp_IS66 DDE_Tnp_IS66_C LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 RVT-GII GIIM RVT-GII TnpB_IS66 Feature: gene Location: 11236-11544 bp Ori: EGX67826.1 Feature: domain Description: DDE_Tnp_IS66 Location: 11242-11440 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1 1 242-1 1 440 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 11461-11530 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 1 1 461 -1 1 530 bp Feature: gene Location: 11606-12781 bp Ori: EGX67827.1 Feature: domain Description: LZ_Tnp_IS66 Location: 11750-11963 bp Feature: domain Description: LZ_Tnp_IS66 Location: 1 1 750-1 1 963 bp Feature: domain Description: zf-IS66 Location: 11990-12122 bp Feature: domain Description: zf-IS66 Location: 1 1 990-1 21 22 bp Feature: domain Description: DDE_Tnp_IS66 Location: 12194-12767 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1 21 94-1 2767 bp Feature: gene Location: 12890-13519 bp Ori: EGX67828.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12899-13157 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 2899-1 31 57 bp Feature: domain Description: GIIM Note: maturase Location: 13223-13442 bp Feature: domain Description: GIIM Note: maturase Location: 1 3223-1 3442 bp Feature: gene Location: 13523-14206 bp Ori: EGX67829.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13784-14204 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 3784-1 4204 bp Feature: gene Location: 14923-15222 bp Ori: EGX67830.1 Feature: domain Description: TnpB_IS66 Location: 14953-15220 bp Feature: domain Description: TnpB_IS66 Location: 1 4953-1 5220 bp Feature: gene Location: 15216-15551 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), RVT-GII, GIIM (pfam08388), TnpB_IS66 (pfam05717)

Seq: JH126537.1 Dorea formicigenerans 4_6_53AFAA genomic scaffold supercont1.51, whole genome shotgun sequence (2173 bp)
Overview 1 RT 1: 83-1190 bp Neighborhood of RT #1 [83, 1366] RVT-GII GIIM Feature: gene Location: 83-1366 bp Ori: EGX77576.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 293-908 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 93-908 bp Feature: domain Description: GIIM Note: maturase Location: 968-1190 bp Feature: domain Description: GIIM Note: maturase Location: 968-1190 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: JH126522.1 Dorea formicigenerans 4_6_53AFAA genomic scaffold supercont1.36, whole genome shotgun sequence (16097 bp)
Overview 1 RT 1: 9006-14244 bp Neighborhood of RT #1 [9006, 14261] VirD4 TraG-D_C RVT-GII Intron_maturas2 PRK13857 Feature: gene Location: 9006-10385 bp Ori: EGX77895.1 Feature: domain Description: VirD4 Location: 9225-10356 bp Feature: domain Description: VirD4 Location: 9225-103 56 bp Feature: gene Location: 10687-10929 bp Ori: EGX77876.1 Feature: domain Description: TraG-D_C Location: 10732-10900 bp Feature: domain Description: TraG-D_C Location: 1073 2-10900 bp Feature: gene Location: 11422-13308 bp Ori: EGX77877.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11755-12589 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11755-12589 bp Feature: domain Description: Intron_maturas2 Location: 12673-13015 bp Feature: domain Description: Intron_maturas2 Location: 12673 -13 015 bp Feature: gene Location: 13572-13862 bp Feature: gene Location: 13896-14261 bp Ori: EGX77879.1 Feature: domain Description: PRK13857 Location: 13965-14244 bp Feature: domain Description: PRK13 857 Location: 13 965-14244 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT VirD4 (COG3505), TraG-D_C (pfam12696), RVT-GII, Intron_maturas2 (pfam01348), PRK13857 (pilin major subunit VirB2)

Seq: JH126500.1 Dorea formicigenerans 4_6_53AFAA genomic scaffold supercont1.14, whole genome shotgun sequence (117226 bp)
Overview 1 RT 1: 68425-73950 bp Neighborhood of RT #1 [68425, 73950] RVT-GII GIIM HTH_32 DDE_3 Feature: gene Location: 68425-69090 bp Feature: gene Location: 69098-69628 bp Feature: gene Location: 70488-71621 bp Ori: EGX72250.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 70518-71136 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 70518-71136 bp Feature: domain Description: GIIM Note: maturase Location: 71193-71406 bp Feature: domain Description: GIIM Note: maturase Location: 71193-714 06 bp Feature: gene Location: 72017-73201 bp Ori: EGX72251.1 Feature: domain Description: HTH_32 Location: 72209-72461 bp Feature: domain Description: HTH_32 Location: 72209-724 61 bp Feature: domain Description: DDE_3 Location: 72626-73067 bp Feature: domain Description: DDE_3 Location: 72626-73067 bp Feature: gene Location: 73276-73950 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), HTH_32 (pfam13565), DDE_3 (pfam13358)