myRT

myRT report for GCA_000226135.2_ASM22613v2

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Seq: AGDG01000032.1 Bacteroides faecis MAJ27 contig032, whole genome shotgun sequence (359759 bp)
Overview 1 RT 1: 207338-215889 bp 2 RT 2: 237826-241929 bp Neighborhood of RT #1 [207338, 215889] N6_Mtase COG4646 RVT_N RVT-GII GIIM Spc7 Neighborhood of RT #2 [237826, 241958] DUF4141 RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_J Feature: gene Location: 207338-212050 bp Feature: domain Description: N6_Mtase Location: 207899-208256 bp Feature: domain Description: N6_Mtase Location: 207899-208256 bp Feature: domain Description: COG4646 Location: 209660-211667 bp Feature: domain Description: COG4646 Location: 209660-21 1 667 bp Feature: gene Location: 212411-212692 bp Feature: gene Location: 212707-214374 bp Feature: RT Description: RVT_N Location: 212761-213004 bp Feature: RT Description: RVT_N Location: 21 2761 -21 3004 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 213049-213697 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 3049-21 3697 bp Feature: domain Description: GIIM Note: maturase Location: 213751-213982 bp Feature: domain Description: GIIM Note: maturase Location: 21 3751 -21 3982 bp Feature: gene Location: 214328-215641 bp Feature: domain Description: Spc7 Location: 215252-215519 bp Feature: domain Description: Spc7 Location: 21 5252-21 551 9 bp Feature: gene Location: 215728-215889 bp Feature: gene Location: 237826-238065 bp Feature: domain Description: DUF4141 Location: 237838-237994 bp Feature: domain Description: DUF41 41 Location: 237838-237994 bp Feature: gene Location: 238105-238266 bp Feature: gene Location: 238586-240421 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 238880-239702 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 238880-239702 bp Feature: domain Description: Intron_maturas2 Location: 239861-240230 bp Feature: domain Description: Intron_maturas2 Location: 239861 -240230 bp Feature: domain Description: HNHc Note: nucleases Location: 240254-240395 bp Feature: domain Description: HNHc Note: nucleases Location: 240254-240395 bp Feature: gene Location: 240414-240950 bp Feature: gene Location: 240954-241958 bp Feature: domain Description: Bac_Flav_CT_J Location: 240960-241929 bp Feature: domain Description: Bac_Flav_CT_J Location: 240960-241 929 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT N6_Mtase (pfam02384), COG4646 (Adenine-specific DNA methylase, N12 class ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), Spc7 (smart00787), DUF4141 (pfam13605), Intron_maturas2 (pfam01348), HNHc (smart00507), Bac_Flav_CT_J (TIGR03782)

Seq: AGDG01000028.1 Bacteroides faecis MAJ27 contig028, whole genome shotgun sequence (199188 bp)
Overview 1 RT 1: 25838-27381 bp Neighborhood of RT #1 [25838, 27381] HTH_28 RVT-GII Feature: gene Location: 25838-25990 bp Feature: gene Location: 26168-26458 bp Feature: domain Description: HTH_28 Location: 26192-26336 bp Feature: domain Description: HTH_2 8 Location: 2 6192 -2 6336 bp Feature: gene Location: 26579-26776 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26582-26774 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 6582 -2 6774 bp Feature: gene Location: 26806-27015 bp Feature: gene Location: 27019-27381 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_28 (pfam13518), RVT-GII

Seq: AGDG01000027.1 Bacteroides faecis MAJ27 contig027, whole genome shotgun sequence (417166 bp)
Overview 1 RT 1: 371284-375993 bp Neighborhood of RT #1 [371284, 376007] Bac_Flav_CT_G Bac_Flav_CT_G RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_G Feature: gene Location: 371284-371457 bp Feature: domain Description: Bac_Flav_CT_G Location: 371287-371443 bp Feature: domain Description: Bac_Flav_CT_G Location: 3 71287-3 71443 bp Feature: gene Location: 371464-371742 bp Feature: domain Description: Bac_Flav_CT_G Location: 371482-371740 bp Feature: domain Description: Bac_Flav_CT_G Location: 3 71482-3 71740 bp Feature: gene Location: 371820-373631 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 372084-372906 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 72084-3 72906 bp Feature: domain Description: Intron_maturas2 Location: 372981-373296 bp Feature: domain Description: Intron_maturas2 Location: 3 72981-3 73 296 bp Feature: domain Description: HNHc Note: nucleases Location: 373452-373602 bp Feature: domain Description: HNHc Note: nucleases Location: 3 73 452-3 73 602 bp Feature: gene Location: 373977-374150 bp Feature: gene Location: 374178-376007 bp Feature: domain Description: Bac_Flav_CT_G Location: 374181-375993 bp Feature: domain Description: Bac_Flav_CT_G Location: 3 74181-3 75993 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Bac_Flav_CT_G (TIGR03783), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: AGDG01000026.1 Bacteroides faecis MAJ27 contig026, whole genome shotgun sequence (158792 bp)
Overview 1 RT 1: 97701-101766 bp Neighborhood of RT #1 [97701, 101825] Bac_Flav_CT_J RVT-GII Intron_maturas2 HNHc DUF4141 Feature: gene Location: 97701-98696 bp Feature: domain Description: Bac_Flav_CT_J Location: 97722-98685 bp Feature: domain Description: Bac_Flav_CT_J Location: 97722-98685 bp Feature: gene Location: 98716-99252 bp Feature: gene Location: 99245-101080 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 99539-100361 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 99539-100361 bp Feature: domain Description: Intron_maturas2 Location: 100520-100889 bp Feature: domain Description: Intron_maturas2 Location: 100520-100889 bp Feature: domain Description: HNHc Note: nucleases Location: 100913-101054 bp Feature: domain Description: HNHc Note: nucleases Location: 100913-101054 bp Feature: gene Location: 101400-101561 bp Feature: gene Location: 101601-101825 bp Feature: domain Description: DUF4141 Location: 101610-101766 bp Feature: domain Description: DUF4 14 1 Location: 101610-101766 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4141 (pfam13605), Bac_Flav_CT_J (TIGR03782), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: AGDG01000022.1 Bacteroides faecis MAJ27 contig022, whole genome shotgun sequence (150641 bp)
Overview 1 RT 1: 102736-105407 bp Neighborhood of RT #1 [102736, 105475] RVT-Retrons Virulence_RhuM Feature: gene Location: 102736-102870 bp Feature: gene Location: 103019-103234 bp Feature: gene Location: 103259-104116 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 103421-103946 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 103421-103946 bp Feature: gene Location: 104147-105028 bp Feature: gene Location: 105293-105475 bp Feature: domain Description: Virulence_RhuM Location: 105308-105407 bp Feature: domain Description: Virulence_RhuM Location: 105 308-105 407 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, Virulence_RhuM (pfam13310)

Seq: AGDG01000020.1 Bacteroides faecis MAJ27 contig020, whole genome shotgun sequence (266111 bp)
Overview 1 RT 1: 183723-196425 bp Neighborhood of RT #1 [183723, 196541] RVT-Retrons DUF4011 DEXXQc_SF1 DEXXQc_SF1 KOG1803 MTES_1575 DUF3320 rpsA Feature: gene Location: 183723-184232 bp Feature: gene Location: 185137-187323 bp Feature: gene Location: 187528-188661 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 187852-188398 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 187852-188398 bp Feature: gene Location: 188703-194576 bp Feature: domain Description: DUF4011 Location: 189867-190377 bp Feature: domain Description: DUF4011 Location: 18986 7-190377 bp Feature: domain Description: DEXXQc_SF1 Location: 190716-191325 bp Feature: domain Description: DEXXQc_SF1 Location: 190716 -191325 bp Feature: domain Description: DEXXQc_SF1 Location: 191988-192903 bp Feature: domain Description: DEXXQc_SF1 Location: 191988-192903 bp Feature: domain Description: KOG1803 Location: 193038-193416 bp Feature: domain Description: KOG1803 Location: 193038-193416 bp Feature: domain Description: MTES_1575 Location: 193575-193863 bp Feature: domain Description: MTES_1575 Location: 193575-19386 3 bp Feature: domain Description: DUF3320 Location: 194094-194214 bp Feature: domain Description: DUF3320 Location: 194094-194214 bp Feature: gene Location: 194745-196541 bp Feature: domain Description: rpsA Location: 194814-196425 bp Feature: domain Description: rpsA Location: 194814-196 425 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), KOG1803 (KOG1803, DNA helicase ), MTES_1575 (pfam18741), DUF3320 (pfam11784), rpsA (TIGR00717)