myRT

myRT report for GCA_000226475.2_ASM22647v2

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Seq: AGFJ01000815.1 Pseudomonas putida str. Idaho conitg000815, whole genome shotgun sequence (9464 bp)
Overview 1 RT 1: 2-2450 bp Neighborhood of RT #1 [2, 2455] RVT-GII PRK05657 Feature: gene Location: 2-973 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 359-953 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 359-953 bp Feature: gene Location: 1123-1293 bp Feature: gene Location: 1448-2455 bp Feature: domain Description: PRK05657 Location: 1508-2450 bp Feature: domain Description: PRK05657 Location: 1 508-2450 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, PRK05657 (RNA polymerase sigma factor RpoS; Validated)

Seq: AGFJ01000722.1 Pseudomonas putida str. Idaho conitg000722, whole genome shotgun sequence (1462 bp)
Overview 1 RT 1: 3-1258 bp Neighborhood of RT #1 [3, 1425] RVT-GII GIIM Feature: gene Location: 3-164 bp Feature: gene Location: 169-1425 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 361-976 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 361-976 bp Feature: domain Description: GIIM Note: maturase Location: 1030-1258 bp Feature: domain Description: GIIM Note: maturase Location: 1030-12 58 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: AGFJ01000622.1 Pseudomonas putida str. Idaho conitg000622, whole genome shotgun sequence (2029 bp)
Overview 1 RT 1: 1-1859 bp Neighborhood of RT #1 [1, 2026] RVT-GII GIIM Feature: gene Location: 1-504 bp Feature: gene Location: 605-2026 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 962-1577 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 962-1577 bp Feature: domain Description: GIIM Note: maturase Location: 1634-1859 bp Feature: domain Description: GIIM Note: maturase Location: 163 4-1859 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: AGFJ01000096.1 Pseudomonas putida str. Idaho conitg000096, whole genome shotgun sequence (14703 bp)
Overview 1 RT 1: 10217-14329 bp Neighborhood of RT #1 [10217, 14679] Integrase_1 dnaG RVT-UNC RVT-UNC Feature: gene Location: 10217-10456 bp Feature: gene Location: 10472-11461 bp Feature: domain Description: Integrase_1 Location: 10682-11081 bp Feature: domain Description: Integrase_1 Location: 10682-11081 bp Feature: gene Location: 11761-14679 bp Feature: domain Description: dnaG Location: 11800-12958 bp Feature: domain Description: dnaG Location: 11800-12958 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 13759-13939 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 13759-13939 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 14089-14329 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 14 089-14 329 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Integrase_1 (pfam12835), dnaG (TIGR01391), RVT-UG10/RVT-UG25(RVT-UNC)

Seq: AGFJ01000078.1 Pseudomonas putida str. Idaho conitg000078, whole genome shotgun sequence (1861 bp)
Overview 1 RT 1: 456-1623 bp Neighborhood of RT #1 [456, 1805] RVT-GII GIIM Feature: gene Location: 456-1805 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 738-1353 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 738-135 3 bp Feature: domain Description: GIIM Note: maturase Location: 1410-1623 bp Feature: domain Description: GIIM Note: maturase Location: 1410-1623 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)