myRT

myRT report for GCA_000227585.1_ASM22758v1

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Seq: CAFB01000044.1 Candidatus Glomeribacter gigasporarum BEG34 WGS project CAFB00000000 data, annotated Contig2-1692, whole genome shotgun sequence (47101 bp)
Overview 1 RT 1: 825-6784 bp Neighborhood of RT #1 [825, 6909] COG4190 RVT-GII GIIM RVT-GII PinE Zn_ribbon_recom Transposase_20 Feature: gene Location: 825-1187 bp Ori: CCD29597.1 Feature: domain Description: COG4190 Location: 924-1179 bp Feature: domain Description: COG41 90 Location: 924-1 1 79 bp Feature: gene Location: 1184-1414 bp Feature: gene Location: 2116-2922 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2119-2536 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 1 9-2536 bp Feature: domain Description: GIIM Note: maturase Location: 2611-2827 bp Feature: domain Description: GIIM Note: maturase Location: 261 1 -2827 bp Feature: gene Location: 2989-3120 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3007-3112 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3007-31 1 2 bp Feature: gene Location: 3944-6151 bp Ori: CCD29601.1 Feature: domain Description: PinE Location: 3986-4622 bp Feature: domain Description: PinE Location: 3986-4622 bp Feature: domain Description: Zn_ribbon_recom Location: 4940-5126 bp Feature: domain Description: Zn_ribbon_recom Location: 4940-51 26 bp Feature: gene Location: 6400-6909 bp Feature: domain Description: Transposase_20 Location: 6535-6784 bp Feature: domain Description: Transposase_20 Location: 6535-6784 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4190 (Predicted transcriptional regulator ), RVT-GII, GIIM (pfam08388), PinE (COG1961), Zn_ribbon_recom (pfam13408), Transposase_20 (pfam02371)

Seq: CAFB01000067.1 Candidatus Glomeribacter gigasporarum BEG34 WGS project CAFB00000000 data, annotated Contig1532-1692, whole genome shotgun sequence (5020 bp)
Overview 1 RT 1: 1121-3458 bp Neighborhood of RT #1 [1121, 3535] Resolvase RVT-GII HTH_LUXR Feature: gene Location: 1121-1267 bp Feature: gene Location: 1292-1483 bp Feature: domain Description: Resolvase Location: 1307-1481 bp Feature: domain Description: Resolvase Location: 1307-1481 bp Feature: gene Location: 1859-2371 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1862-2156 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1862 -2 156 bp Feature: gene Location: 2732-3535 bp Ori: CCD30152.1 Feature: domain Description: HTH_LUXR Location: 3329-3458 bp Feature: domain Description: HTH_LUXR Location: 332 9-3458 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Resolvase (smart00857), RVT-GII, HTH_LUXR (smart00421)

Seq: CAFB01000058.1 Candidatus Glomeribacter gigasporarum BEG34 WGS project CAFB00000000 data, annotated Contig20-1692, whole genome shotgun sequence (37403 bp)
Overview 1 RT 1: 16573-23072 bp Neighborhood of RT #1 [16573, 23104] PBP2_DppA_like RVT-GII GIIM CDPS PRK11107 Feature: gene Location: 16573-17379 bp Feature: gene Location: 17376-19031 bp Ori: CCD30064.1 Gene: dppA Feature: domain Description: PBP2_DppA_like Location: 17532-18966 bp Feature: domain Description: PBP2_DppA_like Location: 1753 2-18966 bp Feature: gene Location: 19502-20818 bp Ori: CCD30065.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19805-20432 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19805-2043 2 bp Feature: domain Description: GIIM Note: maturase Location: 20507-20723 bp Feature: domain Description: GIIM Note: maturase Location: 20507-20723 bp Feature: gene Location: 21049-21924 bp Ori: CCD30066.1 Feature: domain Description: CDPS Location: 21289-21670 bp Feature: domain Description: CDPS Location: 21289-21670 bp Feature: gene Location: 22016-23104 bp Ori: CCD30067.1 Feature: domain Description: PRK11107 Location: 22352-23072 bp Feature: domain Description: PRK11107 Location: 223 52-23 072 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PBP2_DppA_like (cd08493), RVT-GII, GIIM (pfam08388), CDPS (pfam16715), PRK11107 (hybrid sensory histidine kinase BarA; Provisional)

Seq: CAFB01000049.1 Candidatus Glomeribacter gigasporarum BEG34 WGS project CAFB00000000 data, annotated Contig5-1692, whole genome shotgun sequence (34116 bp)
Overview 1 RT 1: 11478-19456 bp Neighborhood of RT #1 [11478, 19506] HSDR_N_2 HsdM group_II_RT_mat RVT-GII RVT-GII GerE PBP2_DppA_like Feature: gene Location: 11478-14105 bp Feature: domain Description: HSDR_N_2 Location: 11679-11901 bp Feature: domain Description: HSDR_N_2 Location: 11679-11901 bp Feature: domain Description: HsdM Location: 12099-13482 bp Feature: domain Description: HsdM Location: 12099-134 82 bp Feature: gene Location: 15001-15453 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 15037-15340 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 15037-1534 0 bp Feature: gene Location: 15547-15792 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15550-15790 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15550-15790 bp Feature: gene Location: 15883-16242 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16087-16240 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16087-1624 0 bp Feature: gene Location: 17115-17903 bp Ori: CCD29847.1 Feature: domain Description: GerE Location: 17700-17823 bp Feature: domain Description: GerE Location: 17700-17823 bp Feature: gene Location: 17932-19506 bp Ori: CCD29848.1 Gene: dppA Feature: domain Description: PBP2_DppA_like Location: 17989-19456 bp Feature: domain Description: PBP2_DppA_like Location: 17989-194 56 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HSDR_N_2 (pfam13588), HsdM (COG0286), group_II_RT_mat (TIGR04416), RVT-GII, GerE (pfam00196), PBP2_DppA_like (cd08493)

Seq: CAFB01000040.1 Candidatus Glomeribacter gigasporarum BEG34 WGS project CAFB00000000 data, annotated Contig13-1692, whole genome shotgun sequence (76227 bp)
Overview 1 RT 1: 8558-13544 bp Neighborhood of RT #1 [8558, 13567] PinE Zn_ribbon_recom DUF5372 RVT-GII GIIM BrnA_antitoxin Feature: gene Location: 8558-10765 bp Ori: CCD29372.1 Feature: domain Description: PinE Location: 8600-9287 bp Feature: domain Description: PinE Location: 8600-9287 bp Feature: domain Description: Zn_ribbon_recom Location: 9554-9740 bp Feature: domain Description: Zn_ribbon_recom Location: 95 5 4-9740 bp Feature: gene Location: 11283-11576 bp Ori: CCD29373.1 Feature: domain Description: DUF5372 Location: 11301-11529 bp Feature: domain Description: DUF5 372 Location: 11301-115 29 bp Feature: gene Location: 11588-12592 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11609-12206 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11609-12206 bp Feature: domain Description: GIIM Note: maturase Location: 12281-12497 bp Feature: domain Description: GIIM Note: maturase Location: 12281-12497 bp Feature: gene Location: 12742-13005 bp Feature: gene Location: 13325-13567 bp Ori: CCD29376.1 Feature: domain Description: BrnA_antitoxin Location: 13406-13544 bp Feature: domain Description: BrnA_antitoxin Location: 13406-135 44 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PinE (COG1961), Zn_ribbon_recom (pfam13408), DUF5372 (pfam17342), RVT-GII, GIIM (pfam08388), BrnA_antitoxin (pfam14384)

Seq: CAFB01000061.1 Candidatus Glomeribacter gigasporarum BEG34 WGS project CAFB00000000 data, annotated Contig1476-1692, whole genome shotgun sequence (8175 bp)
Overview 1 RT 1: 1033-6257 bp Neighborhood of RT #1 [1033, 6271] Arm-DNA-bind_1 INT_Lambda_C RVT_N RVT-GII GIIM HNHc DUF4351 Feature: gene Location: 1033-2109 bp Ori: CCD30102.1 Feature: domain Description: Arm-DNA-bind_1 Location: 1036-1186 bp Feature: domain Description: Arm-DNA-bind_1 Location: 1036 -1186 bp Feature: domain Description: INT_Lambda_C Location: 1618-2089 bp Feature: domain Description: INT_Lambda_C Location: 16 18-2089 bp Feature: gene Location: 2947-3492 bp Feature: gene Location: 3776-5479 bp Ori: CCD30104.1 Feature: domain Description: RVT_N Location: 3836-4082 bp Feature: domain Description: RVT_N Location: 3836 -4082 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4130-4796 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4130-4796 bp Feature: domain Description: GIIM Note: maturase Location: 4862-5084 bp Feature: domain Description: GIIM Note: maturase Location: 486 2-5084 bp Feature: domain Description: HNHc Note: nucleases Location: 5324-5468 bp Feature: domain Description: HNHc Note: nucleases Location: 5324-546 8 bp Feature: gene Location: 5512-5919 bp Feature: gene Location: 5975-6271 bp Feature: domain Description: DUF4351 Location: 6095-6257 bp Feature: domain Description: DUF4351 Location: 6 095-6 257 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Arm-DNA-bind_1 (pfam09003), INT_Lambda_C (cd00800), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), DUF4351 (pfam14261)