myRT

myRT report for GCA_000228725.3_ASM22872v3

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Seq: JH603163.1 Thiorhodovibrio sp. 970 genomic scaffold Thi970scaffold_1, whole genome shotgun sequence (184221 bp)
Overview 1 RT 1: 166981-175583 bp 2 RT 2: 180704-184156 bp Neighborhood of RT #1 [166981, 175603] Cas2_I_II_III RVT-CRISPR Cas_Cas1 DeoA DeoA ElsH Neighborhood of RT #2 [180704, 184221] TIGR03986 RVT-GII GIIM Feature: gene Location: 166981-167265 bp Ori: EIC24022.1 Feature: domain Description: Cas2_I_II_III Location: 167005-167221 bp Feature: domain Description: Cas2_I_II_III Location: 1 67005-1 67221 bp Feature: gene Location: 167566-167823 bp Feature: gene Location: 168400-170952 bp Ori: EIC24024.1 Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 169393-169921 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 1 69393-1 69921 bp Feature: domain Description: Cas_Cas1 Location: 169984-170818 bp Feature: domain Description: Cas_Cas1 Location: 1 69984-1 7081 8 bp Feature: gene Location: 171132-174740 bp Ori: EIC24025.1 Feature: domain Description: DeoA Location: 173475-173919 bp Feature: domain Description: DeoA Location: 1 73475-1 7391 9 bp Feature: domain Description: DeoA Location: 174459-174642 bp Feature: domain Description: DeoA Location: 1 74459-1 74642 bp Feature: gene Location: 174737-175603 bp Ori: EIC24026.1 Feature: domain Description: ElsH Location: 174740-175583 bp Feature: domain Description: ElsH Location: 1 74740-1 75583 bp Feature: gene Location: 180704-181279 bp Feature: gene Location: 181337-183178 bp Ori: EIC24032.1 Feature: domain Description: TIGR03986 Location: 181355-183047 bp Feature: domain Description: TIGR03986 Location: 1 81 355-1 83047 bp Feature: gene Location: 183709-184221 bp Ori: EIC24033.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 183715-183874 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 8371 5-1 83874 bp Feature: domain Description: GIIM Note: maturase Location: 183964-184156 bp Feature: domain Description: GIIM Note: maturase Location: 1 83964-1 841 56 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cas2_I_II_III (cl11442), RVT-CRISPR, Cas_Cas1 (pfam01867), DeoA (COG0213), ElsH (COG3568), TIGR03986 (CRISPR-associated protein), RVT-GII, GIIM (pfam08388)

Seq: JH603169.1 Thiorhodovibrio sp. 970 genomic scaffold Thi970scaffold_7, whole genome shotgun sequence (1850174 bp)
Overview 1 RT 1: 346651-350127 bp 2 RT 2: 718974-724163 bp 3 RT 3: 1567804-1576417 bp 4 RT 4: 1649224-1653829 bp 5 RT 5: 1790286-1794885 bp Neighborhood of RT #1 [346651, 350219] ocin_ocin_ocin_TIGR03798 TOMM_pelo RVT-UG4 TOMM_pelo HDGYP Neighborhood of RT #2 [718974, 724318] Dcm GIY-YIG_RE_Cfr42I RVT-GII Acyl_transf_3 CPBP Neighborhood of RT #3 [1567804, 1576623] RVT_N RVT-GII GIIM UbiE DPM_DPG-synthase_like Neighborhood of RT #4 [1649224, 1653829] COG2405 RVT-GII kpsF Neighborhood of RT #5 [1790286, 1794885] NHLM_micro_ABC1 NHLM_micro_HlyD RVT-UG4 TOMM_pelo Feature: gene Location: 346651-346923 bp Ori: EIC21482.1 Feature: domain Description: ocin_ocin_ocin_TIGR03798 Location: 346666-346876 bp Feature: domain Description: ocin_ocin_ocin_TIGR03798 Location: 346666-346876 bp Feature: gene Location: 347154-347351 bp Ori: EIC21483.1 Feature: domain Description: TOMM_pelo Location: 347169-347349 bp Feature: domain Description: TOMM_pelo Location: 347169-347349 bp Feature: gene Location: 347585-348175 bp Ori: EIC21484.1 Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 347648-347933 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 347648-347933 bp Feature: gene Location: 348306-348578 bp Ori: EIC21485.1 Feature: domain Description: TOMM_pelo Location: 348324-348540 bp Feature: domain Description: TOMM_pelo Location: 34832 4-348540 bp Feature: gene Location: 349284-350219 bp Ori: EIC21486.1 Feature: domain Description: HDGYP Location: 349488-350127 bp Feature: domain Description: HDGYP Location: 349488-35012 7 bp Feature: gene Location: 718974-720188 bp Ori: EIC21820.1 Feature: domain Description: Dcm Location: 718977-720141 bp Feature: domain Description: Dcm Location: 718977-72 0141 bp Feature: gene Location: 720185-720829 bp Ori: EIC21821.1 Feature: domain Description: GIY-YIG_RE_Cfr42I Location: 720209-720671 bp Feature: domain Description: GIY-YIG_RE_Cfr42 I Location: 72 02 09-72 0671 bp Feature: gene Location: 721630-722967 bp Ori: EIC21822.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 721888-722557 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 72 1888-72 2 557 bp Feature: domain Description: Acyl_transf_3 Location: 722755-722929 bp Feature: domain Description: Acyl_transf_3 Location: 72 2 755-72 2 92 9 bp Feature: gene Location: 723078-723494 bp Feature: gene Location: 723491-724318 bp Ori: EIC21824.1 Feature: domain Description: CPBP Location: 723872-724163 bp Feature: domain Description: CPBP Location: 72 3872 -72 4163 bp Feature: gene Location: 1567804-1570272 bp Feature: gene Location: 1571926-1572522 bp Feature: gene Location: 1572519-1573970 bp Ori: EIC22548.1 Feature: domain Description: RVT_N Location: 1572570-1572813 bp Feature: domain Description: RVT_N Location: 1572 570-1572 813 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1572858-1573482 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1572 858-1573482 bp Feature: domain Description: GIIM Note: maturase Location: 1573536-1573767 bp Feature: domain Description: GIIM Note: maturase Location: 1573536-1573767 bp Feature: gene Location: 1574468-1575106 bp Feature: gene Location: 1575193-1576623 bp Ori: EIC22550.1 Feature: domain Description: UbiE Location: 1575319-1575583 bp Feature: domain Description: UbiE Location: 1575319-1575583 bp Feature: domain Description: DPM_DPG-synthase_like Location: 1575922-1576417 bp Feature: domain Description: DPM_DPG-synthase_like Location: 157592 2 -1576417 bp Feature: gene Location: 1649224-1649709 bp Ori: EIC22615.1 Feature: domain Description: COG2405 Location: 1649227-1649689 bp Feature: domain Description: COG2 405 Location: 16492 2 7-1649689 bp Feature: gene Location: 1649787-1650011 bp Feature: gene Location: 1650266-1651600 bp Ori: EIC22617.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1650524-1651211 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 165052 4-16512 11 bp Feature: gene Location: 1652436-1653386 bp Ori: EIC22618.1 Feature: domain Description: kpsF Location: 1652562-1653357 bp Feature: domain Description: kpsF Location: 1652 562 -1653357 bp Feature: gene Location: 1653431-1653829 bp Feature: gene Location: 1790286-1792484 bp Ori: EIC22726.1 Feature: domain Description: NHLM_micro_ABC1 Location: 1790322-1792479 bp Feature: domain Description: NHLM_micro_ABC1 Location: 179032 2 -1792 479 bp Feature: gene Location: 1792481-1793743 bp Ori: EIC22727.1 Feature: domain Description: NHLM_micro_HlyD Location: 1792511-1793714 bp Feature: domain Description: NHLM_micro_HlyD Location: 1792 511-1793714 bp Feature: gene Location: 1793872-1794210 bp Ori: EIC22728.1 Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 1793875-1793968 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 1793875-1793968 bp Feature: gene Location: 1794308-1794637 bp Ori: EIC22729.1 Feature: domain Description: TOMM_pelo Location: 1794371-1794587 bp Feature: domain Description: TOMM_pelo Location: 1794371-1794587 bp Feature: gene Location: 1794733-1794885 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ocin_ocin_ocin_TIGR03798, TOMM_pelo (TIGR03793), RVT-UG4, HDGYP (COG2206), Dcm (COG0270), GIY-YIG_RE_Cfr42I (cd10453), RVT-GII, Acyl_transf_3 (pfam01757), CPBP, RVT_N (pfam13655)
GIIM (pfam08388), UbiE (COG2226), DPM_DPG-synthase_like (cd04179), COG2405 (Predicted nucleic acid-binding protein, contains PIN domain ), kpsF (TIGR00393), NHLM_micro_ABC1 (TIGR03796), NHLM_micro_HlyD (TIGR03794)

Seq: JH603170.1 Thiorhodovibrio sp. 970 genomic scaffold Thi970scaffold_8, whole genome shotgun sequence (1906777 bp)
Overview 1 RT 1: 1369991-1374048 bp Neighborhood of RT #1 [1369991, 1374059] RVT-DGRs Avd_like PEGA YfmG Feature: gene Location: 1369991-1370164 bp Feature: gene Location: 1370383-1371147 bp Feature: gene Location: 1371296-1372573 bp Ori: EIC20684.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1371506-1372148 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 13 71506-13 72148 bp Feature: gene Location: 1372557-1372955 bp Ori: EIC20685.1 Feature: domain Description: Avd_like Location: 1372623-1372914 bp Feature: domain Description: Avd_like Location: 13 72623 -13 72914 bp Feature: gene Location: 1373001-1374059 bp Ori: EIC20686.1 Feature: domain Description: PEGA Location: 1373112-1373253 bp Feature: domain Description: PEGA Location: 13 73 112-13 73 253 bp Feature: domain Description: YfmG Location: 1373295-1374048 bp Feature: domain Description: YfmG Location: 13 73 295-13 74048 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Avd_like (cd16376), PEGA (pfam08308), YfmG (COG1262)

Seq: JH603168.1 Thiorhodovibrio sp. 970 genomic scaffold Thi970scaffold_6, whole genome shotgun sequence (1019817 bp)
Overview 1 RT 1: 555216-560788 bp 2 RT 2: 699827-701937 bp 3 RT 3: 758891-766305 bp Neighborhood of RT #1 [555216, 560802] rve RVT-GII RHH_6 COG2402 Neighborhood of RT #2 [699827, 702002] RVT-GII GIIM Neighborhood of RT #3 [758891, 766343] DUF2887 pepcterm_export RVT-GII GIIM pepcterm_ChnLen EpsF pepcterm_TyrKin Feature: gene Location: 555216-556217 bp Feature: gene Location: 557341-558385 bp Ori: EIC23272.1 Feature: domain Description: rve Location: 557728-558121 bp Feature: domain Description: rve Location: 557728-558121 bp Feature: gene Location: 558409-559809 bp Ori: EIC23273.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 558718-559420 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 558718-5594 20 bp Feature: gene Location: 560168-560404 bp Ori: EIC23274.1 Feature: domain Description: RHH_6 Location: 560177-560300 bp Feature: domain Description: RHH_6 Location: 560177-560300 bp Feature: gene Location: 560401-560802 bp Ori: EIC23275.1 Feature: domain Description: COG2402 Location: 560416-560788 bp Feature: domain Description: COG24 02 Location: 5604 16-560788 bp Feature: gene Location: 699827-700111 bp Feature: gene Location: 700275-700508 bp Feature: gene Location: 700728-702002 bp Ori: EIC23402.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 700986-701655 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 700986-701655 bp Feature: domain Description: GIIM Note: maturase Location: 701745-701937 bp Feature: domain Description: GIIM Note: maturase Location: 70174 5-701937 bp Feature: gene Location: 758891-759109 bp Ori: EIC23441.1 Feature: domain Description: DUF2887 Location: 758900-759098 bp Feature: domain Description: DUF2887 Location: 758900-759098 bp Feature: gene Location: 759494-760117 bp Ori: EIC23442.1 Feature: domain Description: pepcterm_export Location: 759644-760115 bp Feature: domain Description: pepcterm_export Location: 75964 4 -760115 bp Feature: gene Location: 761708-762982 bp Ori: EIC23443.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 761966-762635 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 761966-762635 bp Feature: domain Description: GIIM Note: maturase Location: 762725-762917 bp Feature: domain Description: GIIM Note: maturase Location: 762725-762917 bp Feature: gene Location: 763717-765495 bp Ori: EIC23444.1 Feature: domain Description: pepcterm_ChnLen Location: 763741-764665 bp Feature: domain Description: pepcterm_ChnLen Location: 76374 1-764 665 bp Feature: domain Description: EpsF Location: 764767-765304 bp Feature: domain Description: EpsF Location: 764 767-765304 bp Feature: gene Location: 765504-766343 bp Ori: EIC23445.1 Feature: domain Description: pepcterm_TyrKin Location: 765711-766305 bp Feature: domain Description: pepcterm_TyrKin Location: 765711-766305 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rve (pfam00665), RVT-GII, RHH_6 (pfam16762), COG2402 (Predicted nucleic acid-binding protein, contains PIN domain ), GIIM (pfam08388), DUF2887 (pfam11103), pepcterm_export (TIGR03027), pepcterm_ChnLen (TIGR03007), EpsF (TIGR03017), pepcterm_TyrKin (TIGR03018)