myRT

myRT report for GCA_000231425.3_ASM23142v3

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Seq: AGJC02000001.1 Crocosphaera subtropica ATCC 51472 Cy51472_Contig181.1_C, whole genome shotgun sequence (4932779 bp)
Overview 1 RT 1: 1027365-1032601 bp 2 RT 2: 1133756-1138316 bp 3 RT 3: 1550109-1555872 bp 4 RT 4: 1778640-1783478 bp 5 RT 5: 2218489-2223782 bp 6 RT 6: 2736174-2742055 bp 7 RT 7: 4020232-4024234 bp 8 RT 8: 4355621-4360780 bp Neighborhood of RT #1 [1027365, 1032636] Uma2 FrhB RVT_N RVT-GII GIIM McrA YpfJ Neighborhood of RT #2 [1133756, 1138357] TIGR00106 RVT_N RVT-GII GIIM HNHc Abhydrolase_1 LPLAT_MGAT-like Neighborhood of RT #3 [1550109, 1556015] McrA RVT_N RVT-GII GIIM HNH PRK10502 Beta4Glucosyltransferase Neighborhood of RT #4 [1778640, 1783678] psbA RVT_N RVT-GII GIIM McrA DDE_Tnp_4 HTH_Tnp_4 Neighborhood of RT #5 [2218489, 2223790] PRK00885 PRK04447 RVT-Retrons COG1569 Neighborhood of RT #6 [2736174, 2742060] PutA D1pyr5carbox2 HicB_lk_antitox RVT-UG16 MoaB PRK13612 Neighborhood of RT #7 [4020232, 4024248] recR HTH_XRE RVT_N RVT-GII GIIM HNH COG2929 Neighborhood of RT #8 [4355621, 4360797] EF-G_bact RVT_N RVT-GII GIIM HNHc PRK12740 CopG_antitoxin Feature: gene Location: 1027365-1027928 bp Feature: domain Description: Uma2 Location: 1027374-1027923 bp Feature: domain Description: Uma2 Location: 1 027374-1 027923 bp Feature: gene Location: 1028355-1029551 bp Feature: domain Description: FrhB Location: 1028409-1029456 bp Feature: domain Description: FrhB Location: 1 028409-1 029456 bp Feature: gene Location: 1029739-1031538 bp Feature: domain Description: RVT_N Location: 1029805-1030051 bp Feature: domain Description: RVT_N Location: 1 029805-1 030051 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1030096-1030783 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 030096-1 030783 bp Feature: domain Description: GIIM Note: maturase Location: 1030885-1031113 bp Feature: domain Description: GIIM Note: maturase Location: 1 030885-1 031 1 1 3 bp Feature: domain Description: McrA Location: 1031191-1031503 bp Feature: domain Description: McrA Location: 1 031 1 91 -1 031 503 bp Feature: gene Location: 1031615-1031893 bp Feature: gene Location: 1032094-1032636 bp Feature: domain Description: YpfJ Location: 1032190-1032601 bp Feature: domain Description: YpfJ Location: 1 0321 90-1 032601 bp Feature: gene Location: 1133756-1134064 bp Feature: domain Description: TIGR00106 Location: 1133768-1134050 bp Feature: domain Description: TIGR001 06 Location: 1 1 33768-1 1 34050 bp Feature: gene Location: 1134238-1134453 bp Feature: gene Location: 1134627-1136492 bp Feature: domain Description: RVT_N Location: 1134777-1135023 bp Feature: domain Description: RVT_N Location: 1 1 34777-1 1 35023 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1135065-1135761 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 35065-1 1 35761 bp Feature: domain Description: GIIM Note: maturase Location: 1135860-1136097 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 35860-1 1 36097 bp Feature: domain Description: HNHc Note: nucleases Location: 1136283-1136442 bp Feature: domain Description: HNHc Note: nucleases Location: 1 1 36283-1 1 36442 bp Feature: gene Location: 1136665-1137291 bp Feature: domain Description: Abhydrolase_1 Location: 1136785-1137016 bp Feature: domain Description: Abhydrolase_1 Location: 1 1 36785-1 1 3701 6 bp Feature: gene Location: 1137464-1138357 bp Feature: domain Description: LPLAT_MGAT-like Location: 1137605-1138316 bp Feature: domain Description: LPLAT_MGAT-like Location: 1 1 37605-1 1 3831 6 bp Feature: gene Location: 1550109-1550606 bp Feature: domain Description: McrA Location: 1550142-1550556 bp Feature: domain Description: McrA Location: 1 5501 42-1 550556 bp Feature: gene Location: 1552160-1552303 bp Feature: gene Location: 1552366-1554243 bp Feature: domain Description: RVT_N Location: 1552456-1552702 bp Feature: domain Description: RVT_N Location: 1 552456-1 552702 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1552744-1553443 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 552744-1 553443 bp Feature: domain Description: GIIM Note: maturase Location: 1553545-1553776 bp Feature: domain Description: GIIM Note: maturase Location: 1 553545-1 553776 bp Feature: domain Description: HNH Note: nucleases Location: 1553995-1554130 bp Feature: domain Description: HNH Note: nucleases Location: 1 553995-1 5541 30 bp Feature: gene Location: 1554458-1555060 bp Feature: domain Description: PRK10502 Location: 1554506-1555046 bp Feature: domain Description: PRK1 0502 Location: 1 554506-1 555046 bp Feature: gene Location: 1555065-1556015 bp Feature: domain Description: Beta4Glucosyltransferase Location: 1555092-1555872 bp Feature: domain Description: Beta4Glucosyltransferase Location: 1 555092-1 555872 bp Feature: gene Location: 1778640-1779710 bp Feature: domain Description: psbA Location: 1778643-1779705 bp Feature: domain Description: psbA Location: 1 778643-1 779705 bp Feature: gene Location: 1779920-1780102 bp Feature: gene Location: 1780217-1782040 bp Feature: domain Description: RVT_N Location: 1780247-1780493 bp Feature: domain Description: RVT_N Location: 1 780247-1 780493 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1780535-1781231 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 780535-1 781 231 bp Feature: domain Description: GIIM Note: maturase Location: 1781336-1781561 bp Feature: domain Description: GIIM Note: maturase Location: 1 781 336-1 781 561 bp Feature: domain Description: McrA Location: 1781648-1781918 bp Feature: domain Description: McrA Location: 1 781 648-1 781 91 8 bp Feature: gene Location: 1782634-1783101 bp Feature: domain Description: DDE_Tnp_4 Location: 1782652-1782976 bp Feature: domain Description: DDE_Tnp_4 Location: 1 782652-1 782976 bp Feature: gene Location: 1783139-1783678 bp Feature: domain Description: HTH_Tnp_4 Location: 1783331-1783478 bp Feature: domain Description: HTH_Tnp_4 Location: 1 783331 -1 783478 bp Feature: gene Location: 2218489-2219748 bp Feature: domain Description: PRK00885 Location: 2218492-2219740 bp Feature: domain Description: PRK00885 Location: 221 8492-221 9740 bp Feature: gene Location: 2219865-2220974 bp Feature: domain Description: PRK04447 Location: 2219886-2220960 bp Feature: domain Description: PRK04447 Location: 221 9886-2220960 bp Feature: gene Location: 2221044-2222882 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2221269-2221869 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2221 269-2221 869 bp Feature: gene Location: 2223139-2223387 bp Feature: gene Location: 2223380-2223790 bp Feature: domain Description: COG1569 Location: 2223392-2223782 bp Feature: domain Description: COG1 569 Location: 2223392-2223782 bp Feature: gene Location: 2736174-2739146 bp Feature: domain Description: PutA Location: 2736198-2737383 bp Feature: domain Description: PutA Location: 27361 98-2737383 bp Feature: domain Description: D1pyr5carbox2 Location: 2737590-2739108 bp Feature: domain Description: D1 pyr5carbox2 Location: 2737590-27391 08 bp Feature: gene Location: 2739192-2739491 bp Feature: domain Description: HicB_lk_antitox Location: 2739204-2739456 bp Feature: domain Description: HicB_lk_antitox Location: 2739204-2739456 bp Feature: gene Location: 2739590-2741077 bp Feature: RT Description: RVT-UG16 Note: UG16 RT Location: 2739965-2740379 bp Feature: RT Description: RVT-UG1 6 Note: UG1 6 RT Location: 2739965-2740379 bp Feature: gene Location: 2741100-2741600 bp Feature: domain Description: MoaB Location: 2741130-2741592 bp Feature: domain Description: MoaB Location: 2741 1 30-2741 592 bp Feature: gene Location: 2741725-2742060 bp Feature: domain Description: PRK13612 Location: 2741728-2742055 bp Feature: domain Description: PRK1 361 2 Location: 2741 728-2742055 bp Feature: gene Location: 4020232-4020840 bp Feature: domain Description: recR Location: 4020253-4020829 bp Feature: domain Description: recR Location: 4020253-4020829 bp Feature: gene Location: 4021028-4021195 bp Feature: domain Description: HTH_XRE Location: 4021037-4021130 bp Feature: domain Description: HTH_XRE Location: 4021 037-4021 1 30 bp Feature: gene Location: 4021277-4023142 bp Feature: domain Description: RVT_N Location: 4021427-4021673 bp Feature: domain Description: RVT_N Location: 4021 427-4021 673 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4021715-4022411 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4021 71 5-402241 1 bp Feature: domain Description: GIIM Note: maturase Location: 4022510-4022747 bp Feature: domain Description: GIIM Note: maturase Location: 402251 0-4022747 bp Feature: domain Description: HNH Note: nucleases Location: 4022963-4023098 bp Feature: domain Description: HNH Note: nucleases Location: 4022963-4023098 bp Feature: gene Location: 4023316-4023531 bp Feature: gene Location: 4023961-4024248 bp Feature: domain Description: COG2929 Location: 4023970-4024234 bp Feature: domain Description: COG2929 Location: 4023970-4024234 bp Feature: gene Location: 4355621-4356319 bp Feature: domain Description: EF-G_bact Location: 4355654-4356308 bp Feature: domain Description: EF-G_bact Location: 4355654-4356308 bp Feature: gene Location: 4356436-4356651 bp Feature: gene Location: 4356825-4358690 bp Feature: domain Description: RVT_N Location: 4356975-4357221 bp Feature: domain Description: RVT_N Location: 4356975-4357221 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4357263-4357959 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4357263-4357959 bp Feature: domain Description: GIIM Note: maturase Location: 4358058-4358295 bp Feature: domain Description: GIIM Note: maturase Location: 4358058-4358295 bp Feature: domain Description: HNHc Note: nucleases Location: 4358481-4358640 bp Feature: domain Description: HNHc Note: nucleases Location: 4358481 -4358640 bp Feature: gene Location: 4359054-4360124 bp Feature: domain Description: PRK12740 Location: 4359072-4360098 bp Feature: domain Description: PRK1 2740 Location: 4359072-4360098 bp Feature: gene Location: 4360525-4360797 bp Feature: domain Description: CopG_antitoxin Location: 4360555-4360780 bp Feature: domain Description: CopG_antitoxin Location: 4360555-4360780 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Uma2 (pfam05685), FrhB (COG1035), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058), YpfJ (COG2321), TIGR00106 (uncharacterized protein, MTH1187 family), HNHc (smart00507), Abhydrolase_1 (pfam00561)
LPLAT_MGAT-like (cd07987), HNH (pfam01844), PRK10502 (putative acyl transferase; Provisional), Beta4Glucosyltransferase (cd02511), psbA (TIGR01151), DDE_Tnp_4 (pfam13359), HTH_Tnp_4 (pfam13613), PRK00885 (phosphoribosylamine--glycine ligase; Provisional), PRK04447 (hypothetical protein; Provisional), RVT-Retrons
COG1569 (Predicted nucleic acid-binding protein, contains PIN domain ), PutA (COG0506), D1pyr5carbox2 (TIGR01237), HicB_lk_antitox (pfam15919), RVT-UG16, MoaB (COG0521), PRK13612 (photosystem II reaction center protein Psb28; Provisional), recR (TIGR00615), HTH_XRE (smart00530), COG2929 (Uncharacterized conserved protein, DUF497 family )
EF-G_bact (cd04170), PRK12740 (elongation factor G-like protein EF-G2), CopG_antitoxin (pfam12441)