myRT

myRT report for GCA_000233455.1_Clos_citr_WAL_17108_V1

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Seq: JH376420.1 Clostridium citroniae WAL-17108 genomic scaffold supercont1.1, whole genome shotgun sequence (2194785 bp)
Overview 1 RT 1: 332532-338554 bp 2 RT 2: 351860-356899 bp Neighborhood of RT #1 [332532, 338554] VirD4 RVT-GII Neighborhood of RT #2 [351860, 356922] RVT-GII Intron_maturas2 ParB_N_like BcsQ Feature: gene Location: 332532-332840 bp Feature: gene Location: 332830-334185 bp Feature: domain Description: VirD4 Location: 332839-334030 bp Feature: domain Description: VirD4 Location: 332839-334030 bp Feature: gene Location: 334298-336124 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 334598-335297 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 334598-335297 bp Feature: gene Location: 336821-337444 bp Feature: gene Location: 337490-338554 bp Feature: gene Location: 351860-352414 bp Feature: gene Location: 352655-353197 bp Feature: gene Location: 353300-355123 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 353576-354407 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 353576-354407 bp Feature: domain Description: Intron_maturas2 Location: 354578-354785 bp Feature: domain Description: Intron_maturas2 Location: 354578-354785 bp Feature: gene Location: 355776-356147 bp Feature: domain Description: ParB_N_like Location: 355884-356136 bp Feature: domain Description: ParB_N_like Location: 355884-3561 36 bp Feature: gene Location: 356125-356922 bp Feature: domain Description: BcsQ Location: 356128-356899 bp Feature: domain Description: BcsQ Location: 3561 28-356899 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT VirD4 (COG3505), RVT-GII, Intron_maturas2 (pfam01348), ParB_N_like (cd16411), BcsQ (COG1192)

Seq: JH376436.1 Clostridium citroniae WAL-17108 genomic scaffold supercont1.17, whole genome shotgun sequence (54911 bp)
Overview 1 RT 1: 41072-47692 bp Neighborhood of RT #1 [41072, 47733] PurR DUF772 RVT-GII HNHc CdaR Feature: gene Location: 41072-42115 bp Feature: domain Description: PurR Location: 41075-42080 bp Feature: domain Description: PurR Location: 41075-42 080 bp Feature: gene Location: 42240-42908 bp Feature: domain Description: DUF772 Location: 42417-42600 bp Feature: domain Description: DUF772 Location: 42 417-42 600 bp Feature: gene Location: 44039-45865 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 44354-45053 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 44354-45053 bp Feature: domain Description: HNHc Note: nucleases Location: 45602-45743 bp Feature: domain Description: HNHc Note: nucleases Location: 45602 -45743 bp Feature: gene Location: 46692-46796 bp Feature: gene Location: 46918-47733 bp Feature: domain Description: CdaR Location: 47218-47692 bp Feature: domain Description: CdaR Location: 472 18-47692 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PurR (COG1609), DUF772 (pfam05598), RVT-GII, HNHc (smart00507), CdaR (COG3835)

Seq: JH376434.1 Clostridium citroniae WAL-17108 genomic scaffold supercont1.15, whole genome shotgun sequence (102786 bp)
Overview 1 RT 1: 1-3583 bp Neighborhood of RT #1 [1, 3588] RVT-GII GIIM RAYT OmpR Feature: gene Location: 1-117 bp Feature: gene Location: 863-2110 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1067-1724 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1067-1724 bp Feature: domain Description: GIIM Note: maturase Location: 1808-2024 bp Feature: domain Description: GIIM Note: maturase Location: 1808-2024 bp Feature: gene Location: 2334-2639 bp Feature: domain Description: RAYT Location: 2337-2559 bp Feature: domain Description: RAYT Location: 23 3 7-2559 bp Feature: gene Location: 2899-3588 bp Feature: domain Description: OmpR Location: 2917-3583 bp Feature: domain Description: OmpR Location: 2917-3 583 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RAYT (COG1943), OmpR (COG0745), RVT-GII, GIIM (pfam08388)

Seq: JH376424.1 Clostridium citroniae WAL-17108 genomic scaffold supercont1.5, whole genome shotgun sequence (365163 bp)
Overview 1 RT 1: 83504-87761 bp Neighborhood of RT #1 [83504, 87787] AcrR DltE RVT-Retrons AIM24 Cons_hypoth95 Feature: gene Location: 83504-84097 bp Feature: domain Description: AcrR Location: 83525-83942 bp Feature: domain Description: AcrR Location: 83525-8394 2 bp Feature: gene Location: 84216-85019 bp Feature: domain Description: DltE Location: 84222-84984 bp Feature: domain Description: DltE Location: 84 222-84 984 bp Feature: gene Location: 85386-86381 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 85551-86106 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 85551-86106 bp Feature: gene Location: 86438-87115 bp Feature: domain Description: AIM24 Location: 86441-87104 bp Feature: domain Description: AIM24 Location: 864 4 1-87104 bp Feature: gene Location: 87230-87787 bp Feature: domain Description: Cons_hypoth95 Location: 87233-87761 bp Feature: domain Description: Cons_hypoth95 Location: 87233-87761 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AcrR (COG1309), DltE (COG3967), RVT-Retrons, AIM24 (pfam01987), Cons_hypoth95 (pfam03602)

Seq: JH376433.1 Clostridium citroniae WAL-17108 genomic scaffold supercont1.14, whole genome shotgun sequence (128803 bp)
Overview 1 RT 1: 3-3104 bp Neighborhood of RT #1 [3, 3346] RVT_N RVT-GII DDE_Tnp_1 zf-HC2 Feature: gene Location: 3-164 bp Feature: gene Location: 680-1660 bp Feature: RT Description: RVT_N Location: 734-977 bp Feature: RT Description: RVT_N Location: 734-977 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1034-1649 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1034-1649 bp Feature: gene Location: 2287-2580 bp Feature: domain Description: DDE_Tnp_1 Location: 2353-2554 bp Feature: domain Description: DDE_Tnp_1 Location: 235 3-25 5 4 bp Feature: gene Location: 2993-3346 bp Feature: domain Description: zf-HC2 Location: 3002-3104 bp Feature: domain Description: zf-HC2 Location: 3002-3104 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1 (pfam01609), zf-HC2 (pfam13490), RVT_N (pfam13655), RVT-GII

Seq: JH376429.1 Clostridium citroniae WAL-17108 genomic scaffold supercont1.10, whole genome shotgun sequence (246750 bp)
Overview 1 RT 1: 75519-78196 bp Neighborhood of RT #1 [75519, 78201] Phage_holin_5_2 RVT-DGRs Phage_XkdX Feature: gene Location: 75519-75815 bp Feature: domain Description: Phage_holin_5_2 Location: 75567-75798 bp Feature: domain Description: Phage_holin_5_2 Location: 7556 7-75798 bp Feature: gene Location: 75827-76150 bp Feature: gene Location: 76168-77364 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 76357-77182 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 76 357-77182 bp Feature: gene Location: 77576-78061 bp Feature: gene Location: 78058-78201 bp Feature: domain Description: Phage_XkdX Location: 78079-78196 bp Feature: domain Description: Phage_XkdX Location: 78079-78196 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_holin_5_2 (pfam16079), RVT-DGRs, Phage_XkdX (pfam09693)

Seq: JH376421.1 Clostridium citroniae WAL-17108 genomic scaffold supercont1.2, whole genome shotgun sequence (694452 bp)
Overview 1 RT 1: 347952-353884 bp Neighborhood of RT #1 [347952, 353904] PotC PBP2_PotD_PotF_like_2 RVT-GII GIIM GlpR DraG Feature: gene Location: 347952-348749 bp Feature: domain Description: PotC Location: 347967-348732 bp Feature: domain Description: PotC Location: 347 967 -3487 32 bp Feature: gene Location: 348794-349906 bp Feature: domain Description: PBP2_PotD_PotF_like_2 Location: 348914-349898 bp Feature: domain Description: PBP2_PotD_PotF_like_2 Location: 348914-349898 bp Feature: gene Location: 350027-351115 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 350057-350642 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 350057 -350642 bp Feature: domain Description: GIIM Note: maturase Location: 350696-350909 bp Feature: domain Description: GIIM Note: maturase Location: 350696-350909 bp Feature: gene Location: 352036-352683 bp Feature: domain Description: GlpR Location: 352042-352675 bp Feature: domain Description: GlpR Location: 352042-35267 5 bp Feature: gene Location: 352888-353904 bp Feature: domain Description: DraG Location: 352900-353884 bp Feature: domain Description: DraG Location: 352900-353884 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PotC (COG1177), PBP2_PotD_PotF_like_2 (cd13663), RVT-GII, GIIM (pfam08388), GlpR (COG1349), DraG (COG1397)